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| List of Freshwater Fishes for Indonesia n=1031 | |||||
| Family | Scientific Name | FB Name | Name | Status | |
| Sparidae | Acanthopagrus berda | Picnic seabream | Bekukung | native |
| Cobitidae | Acanthopsoides gracilis | native |
| Cobitidae | Acanthopsoides molobrion | native |
| Cobitidae | Acanthopsoides robertsi | native |
| Cobitidae | Acantopsis choirorhynchos | Horseface loach | Jeler | native |
| Cobitidae | Acantopsis dialuzona | native |
| Cobitidae | Acantopsis octoactinotos | native |
| Gobiidae | Acentrogobius chlorostigmatoides | Greenspot goby | Puntang | native |
| Achiridae | Achirus poropterus | Estuary sole | native |
| Akysidae | Acrochordonichthys chamaeleon | native |
| Akysidae | Acrochordonichthys guttatus | native |
| Akysidae | Acrochordonichthys ischnosoma | native |
| Akysidae | Acrochordonichthys mahakamensis | native |
| Akysidae | Acrochordonichthys melanogaster | native |
| Akysidae | Acrochordonichthys pachyderma | native |
| Akysidae | Acrochordonichthys pleurostigma | Kekel | native |
| Akysidae | Acrochordonichthys rugosus | Jogoripo | native |
| Akysidae | Acrochordonichthys strigosus | native |
| Adrianichthyidae | Adrianichthys kruyti | Duckbilled buntingi | endemic |
| Cichlidae | Aequidens latifrons | Platinum acara | introduced |
| Cichlidae | Aequidens pulcher | Blue acara | introduced |
| Akysidae | Akysis baramensis | native |
| Akysidae | Akysis fuscus | native |
| Akysidae | Akysis heterurus | native |
| Akysidae | Akysis macronema | native |
| Akysidae | Akysis pseudobagarius | native |
| Akysidae | Akysis variegatus | Bangon | native |
| Albulidae | Albula glossodonta | Roundjaw bonefish | native |
| Albulidae | Albula neoguinaica | Sharpjaw bonefish | native |
| Cyprinidae | Albulichthys albuloides | native |
| Ambassidae | Ambassis agrammus | Sailfin glass perchlet | native |
| Ambassidae | Ambassis buruensis | Buru glass perchlet | native |
| Ambassidae | Ambassis interrupta | Long-spined glass perchlet | Serinding | native |
| Ambassidae | Ambassis macracanthus | Estuarine glass perchlet | native |
| Ambassidae | Ambassis miops | Flag-tailed glass perchlet | native |
| Ambassidae | Ambassis nalua | Scalloped perchlet | Serinding | native |
| Ambassidae | Ambassis urotaenia | Banded-tail glassy perchlet | Rek-rek merah | native |
| Ambassidae | Ambassis vachellii | Vachelli's glass perchlet | native |
| Cyprinidae | Amblyrhynchichthys truncatus | Betet | native |
| Gobiidae | Amoya moloanus | native |
| Anabantidae | Anabas testudineus | Climbing perch | Betok | native |
| Anguillidae | Anguilla bengalensis bengalensis | Indian mottled eel | native |
| Anguillidae | Anguilla bicolor bicolor | Indonesian shortfin eel | native |
| Anguillidae | Anguilla celebesensis | Celebes longfin eel | Menguling | native |
| Anguillidae | Anguilla malgumora | Indonesian longfinned eel | native |
| Anguillidae | Anguilla marmorata | Giant mottled eel | Moa kembang | native |
| Anguillidae | Anguilla nebulosa | Mottled eel | native |
| Anguillidae | Anguilla obscura | Pacific shortfinned eel | native |
| Anguillidae | Anguilla reinhardtii | Speckled longfin eel | native |
| Antennariidae | Antennarius biocellatus | Brackishwater frogfish | native |
| Aplocheilidae | Aplocheilus panchax | Blue panchax | Kepala timah | native |
| Apogonidae | Apogon amboinensis | Amboina cardinalfish | native |
| Apogonidae | Apogon hyalosoma | Humpbacked cardinalfish | Gelagah laut | native |
| Apogonidae | Apogon lateralis | Humpback cardinal | native |
| Cyprinidae | Aristichthys nobilis | Bighead carp | introduced |
| Ariidae | Arius carinatus | Comb-spined catfish | native |
| Ariidae | Arius dioctes | native |
| Ariidae | Arius goniaspis | Gaguk hitam | native |
| Ariidae | Arius graeffei | Lesser salmon catfish | native |
| Ariidae | Arius latirostris | Broad-snouted catfish | native |
| Ariidae | Arius leiotetocephalus | Manyung tongkol | native |
| Ariidae | Arius leptaspis | Salmon catfish | native |
| Ariidae | Arius macronotacanthus | Manyung pidada | native |
| Ariidae | Arius macrorhynchus | Sharp-nosed catfish | native |
| Ariidae | Arius microcephalus | native |
| Ariidae | Arius nudidens | native |
| Ariidae | Arius polystaphylodon | Mozambique sea catfish | Ikan perut | native |
| Ariidae | Arius solidus | Hard-palate catfish | native |
| Ariidae | Arius stormii | Armoured sea catfish | native |
| Ariidae | Arius subrostratus | Shovelnose sea catfish | native |
| Ariidae | Arius sumatranus | Goat catfish | native |
| Ariidae | Arius utarus | Northern rivers catfish | native |
| Ariidae | Arius velutinus | Papillate catfish | Kancur | native |
| Soleidae | Aseraggodes klunzingeri | Tailed sole | native |
| Gobiidae | Aulopareia unicolor | native |
| Tetraodontidae | Auriglobus nefastus | Greenbottle pufferfish | native |
| Gobiidae | Awaous grammepomus | Scribbled goby | native |
| Gobiidae | Awaous guamensis | questionable |
| Gobiidae | Awaous melanocephalus | Largesnout goby | native |
| Gobiidae | Awaous personatus | native |
| Sisoridae | Bagarius bagarius | Dwarf goonch | Kelaling | native |
| Sisoridae | Bagarius yarrelli | Goonch | native |
| Bagridae | Bagrichthys hypselopterus | Blacklancer catfish | Baung layar | native |
| Bagridae | Bagrichthys macracanthus | Black lancer catfish | native |
| Bagridae | Bagrichthys macropterus | False black lancer | native |
| Bagridae | Bagrichthys micranodus | native |
| Bagridae | Bagroides melapterus | Baung tikus | native |
| Cyprinidae | Balantiocheilos melanopterus | Tricolor sharkminnow | Batang buro | native |
| Cyprinidae | Barbichthys laevis | Sucker barb | Santran | native |
| Cyprinidae | Barbodes balleroides | Wader merah | native |
| Cyprinidae | Barbodes belinka | Belingka | native |
| Cyprinidae | Barbodes collingwoodii | native |
| Cyprinidae | Barbodes hexagonolepis | Copper mahseer | native |
| Cyprinidae | Barbodes mahakkamensis | native |
| Cyprinidae | Barbodes platysoma | native |
| Cyprinidae | Barbodes strigatus | native |
| Cyprinidae | Barbodes sunieri | native |
| Cyprinidae | Barbonymus gonionotus | Java barb | Tawes | native |
| Cyprinidae | Barbonymus schwanenfeldii | Tinfoil barb | Ikan lempam | native |
| Balitoridae | Barbucca diabolica | native |
| Cyprinidae | Barilius borneensis | native |
| Ariidae | Batrachocephalus mino | Beardless sea catfish | Manyung kodok | native |
| Eleotridae | Belobranchus belobranchus | Throat-spine gudgeon | native |
| Siluridae | Belodontichthys dinema | Lais tabirin | native |
| Belontiidae | Belontia hasselti | Malay combtail | Ketoprak | native |
| Belontiidae | Betta akarensis | Akar betta | native |
| Belontiidae | Betta albimarginata | native |
| Belontiidae | Betta anabatoides | Giant betta | Melantau | native |
| Belontiidae | Betta balunga | native |
| Belontiidae | Betta bellica | Slim betta | native |
| Belontiidae | Betta breviobesus | native |
| Belontiidae | Betta brownorum | native |
| Belontiidae | Betta burdigala | native |
| Belontiidae | Betta channoides | native |
| Belontiidae | Betta chloropharynx | native |
| Belontiidae | Betta coccina | native |
| Belontiidae | Betta dimidiata | native |
| Belontiidae | Betta edithae | endemic |
| Belontiidae | Betta enisae | native |
| Belontiidae | Betta falx | native |
| Belontiidae | Betta foerschi | endemic |
| Belontiidae | Betta fusca | Dusky betta | native |
| Belontiidae | Betta imbellis | Crescent betta | native |
| Belontiidae | Betta macrostoma | Spotfin betta | native |
| Belontiidae | Betta miniopinna | native |
| Belontiidae | Betta patoti | native |
| Belontiidae | Betta picta | Spotted betta | Betah | native |
| Belontiidae | Betta pinguis | native |
| Belontiidae | Betta pugnax | Penang betta | native |
| Belontiidae | Betta renata | native |
| Belontiidae | Betta rubra | Toba betta | native |
| Belontiidae | Betta rutilans | native |
| Belontiidae | Betta schalleri | native |
| Belontiidae | Betta simorum | native |
| Belontiidae | Betta spilotogena | native |
| Belontiidae | Betta strohi | native |
| Belontiidae | Betta taeniata | Borneo betta | native |
| Belontiidae | Betta unimaculata | Howong betta | native |
| Chaudhuriidae | Bihunichthys monopteroides | native |
| Sciaenidae | Boesemania microlepis | Boeseman croaker | Terusan | native |
| Gobiidae | Boleophthalmus boddarti | Boddart's goggle-eyed goby | Lunjat | native |
| Cyprinidae | Boraras brigittae | native |
| Cyprinidae | Boraras maculatus | Dwarf rasbora | native |
| Cyprinidae | Boraras merah | native |
| Cyprinidae | Boraras urophthalmoides | Least rasbora | native |
| Eleotridae | Bostrichthys aruensis | Island gudgeon | endemic |
| Eleotridae | Bostrichthys strigogenys | Striped-cheek gudgeon | native |
| Eleotridae | Bostrichthys zonatus | Barred gudgeon | native |
| Cobitidae | Botia hymenophysa | Tiger loach | Langli | native |
| Cobitidae | Botia macracanthus | Clown loach | Ikan macan | endemic |
| Cobitidae | Botia reversa | native |
| Soleidae | Brachirus orientalis | Oriental sole | native |
| Soleidae | Brachirus panoides | Lidah | native |
| Gobiidae | Brachyamblyopus brachysoma | native |
| Gobiidae | Brachygobius aggregatus | Schooling bumblebee goby | native |
| Gobiidae | Brachygobius doriae | native |
| Gobiidae | Brachygobius kabiliensis | Kabili bumblebee goby | native |
| Gobiidae | Brachygobius sabanus | native |
| Gobiidae | Brachygobius xanthomelas | native |
| Gobiidae | Brachygobius xanthozona | Bumblebee fish | native |
| Akysidae | Breitensteinia cessator | native |
| Akysidae | Breitensteinia insignis | native |
| Eleotridae | Bunaka gyrinoides | Greenback gauvina | Lapuso | native |
| Eleotridae | Butis amboinensis | Olive flathead-gudgeon | native |
| Eleotridae | Butis butis | Duckbill sleeper | Belosoh | native |
| Eleotridae | Butis gymnopomus | Latåré | native |
| Eleotridae | Butis koilomatodon | Mud sleeper | Puntang | native |
| Gobiidae | Calamiana kabilia | native |
| Gobiidae | Callogobius stellatus | native |
| Gobiidae | Caragobius urolepis | Scaleless worm goby | native |
| Cyprinidae | Carassius auratus auratus | Goldfish | introduced |
| Carcharhinidae | Carcharhinus leucas | Bull shark | native |
| Tetraodontidae | Carinotetraodon irrubesco | native |
| Tetraodontidae | Carinotetraodon lorteti | Redeye puffer | native |
| Siluridae | Ceratoglanis scleronema | Lais hitam | native |
| Mugilidae | Cestraeus goldiei | Goldie river mullet | native |
| Mugilidae | Cestraeus oxyrhynchus | Sharp-nosed river mullet | native |
| Mugilidae | Cestraeus plicatilis | Lobed river mullet | native |
| Chacidae | Chaca bankanensis | Angler catfish | native |
| Chacidae | Chaca chaca | Squarehead catfish | Tuka | native |
| Channidae | Channa bankanensis | native |
| Channidae | Channa cyanospilos | native |
| Channidae | Channa gachua | native |
| Channidae | Channa lucius | native |
| Channidae | Channa marulioides | native |
| Channidae | Channa marulius | Great snakehead | native |
| Channidae | Channa melanoptera | native |
| Channidae | Channa melasoma | Black snakehead | native |
| Channidae | Channa micropeltes | Giant snakehead | Kamal fish | native |
| Channidae | Channa orientalis | Walking snakehead | native |
| Channidae | Channa pleurophthalma | Kerandang | native |
| Channidae | Channa striata | Snakehead murrel | Gabus | native |
| Cyprinidae | Chela laubuca | Indian glass barb | native |
| Cyprinidae | Chela maassi | native |
| Chaudhuriidae | Chendol keelini | native |
| Chaudhuriidae | Chendol lubricus | native |
| Melanotaeniidae | Chilatherina bleheri | Bleher's rainbowfish | endemic |
| Melanotaeniidae | Chilatherina crassispinosa | Silver rainbowfish | native |
| Melanotaeniidae | Chilatherina fasciata | Barred rainbowfish | native |
| Melanotaeniidae | Chilatherina lorentzii | Lorentz's rainbowfish | native |