"/> "/> List of Freshwater Fishes for Indonesia 1130 Record number 1 to 1130 |
| Order | Family | Species | Status | FB name | Name |
| Perciformes | Sparidae | Acanthopagrus berda | native | Picnic seabream | Okeh |
| Cypriniformes | Cobitidae | Acanthopsoides gracilis | native | ||
| Cypriniformes | Cobitidae | Acanthopsoides molobrion | native | ||
| Cypriniformes | Cobitidae | Acanthopsoides robertsi | native | ||
| Cypriniformes | Cobitidae | Acantopsis choirorhynchos | native | Horseface loach | Jeler |
| Cypriniformes | Cobitidae | Acantopsis dialuzona | native | ||
| Cypriniformes | Cobitidae | Acantopsis octoactinotos | native | ||
| Perciformes | Gobiidae | Acentrogobius chlorostigmatoides | native | Greenspot goby | Puntang |
| Siluriformes | Akysidae | Acrochordonichthys chamaeleon | native | Lakut | |
| Siluriformes | Akysidae | Acrochordonichthys guttatus | native | ||
| Siluriformes | Akysidae | Acrochordonichthys ischnosoma | native | ||
| Siluriformes | Akysidae | Acrochordonichthys mahakamensis | native | ||
| Siluriformes | Akysidae | Acrochordonichthys pachyderma | native | ||
| Siluriformes | Akysidae | Acrochordonichthys rugosus | native | Jogoripo | |
| Siluriformes | Akysidae | Acrochordonichthys strigosus | native | ||
| Beloniformes | Adrianichthyidae | Adrianichthys kruyti | endemic | Duckbilled buntingi | |
| Beloniformes | Adrianichthyidae | Adrianichthys roseni | endemic | Rosen's buntingi | |
| Perciformes | Cichlidae | Aequidens latifrons | introduced | Platinum acara | |
| Perciformes | Cichlidae | Aequidens pulcher | introduced | Blue acara | |
| Siluriformes | Akysidae | Akysis galeatus | native | ||
| Siluriformes | Akysidae | Akysis heterurus | native | ||
| Siluriformes | Akysidae | Akysis scorteus | native | ||
| Siluriformes | Akysidae | Akysis variegatus | native | Bangon | |
| Albuliformes | Albulidae | Albula neoguinaica | native | Sharpjaw bonefish | Bonefish |
| Cypriniformes | Cyprinidae | Albulichthys albuloides | native | ||
| Perciformes | Eleotridae | Allomogurnda nesolepis | native | Yellowbelly gudgeon | |
| Perciformes | Eleotridae | Allomogurnda sampricei | native | ||
| Perciformes | Ambassidae | Ambassis agrammus | native | Sailfin glass perchlet | |
| Perciformes | Ambassidae | Ambassis interrupta | native | Long-spined glass perchlet | Serinding |
| Perciformes | Ambassidae | Ambassis macracanthus | native | Estuarine glass perchlet | |
| Perciformes | Ambassidae | Ambassis miops | native | Flag-tailed glass perchlet | |
| Perciformes | Ambassidae | Ambassis nalua | native | Scalloped perchlet | Serinding |
| Perciformes | Ambassidae | Ambassis urotaenia | native | Banded-tail glassy perchlet | Rek-rek merah |
| Perciformes | Ambassidae | Ambassis vachellii | native | Vachelli's glass perchlet | |
| Cypriniformes | Cyprinidae | Amblyrhynchichthys truncatus | native | Betet | |
| Perciformes | Gobiidae | Amoya moloanus | native | ||
| Perciformes | Anabantidae | Anabas testudineus | native | Climbing perch | Betok |
| Anguilliformes | Anguillidae | Anguilla anguilla | not established | European eel | |
| Anguilliformes | Anguillidae | Anguilla bengalensis bengalensis | native | Indian mottled eel | |
| Anguilliformes | Anguillidae | Anguilla bicolor bicolor | native | Indonesian shortfin eel | |
| Anguilliformes | Anguillidae | Anguilla celebesensis | native | Celebes longfin eel | Menguling |
| Anguilliformes | Anguillidae | Anguilla malgumora | native | Indonesian longfinned eel | |
| Anguilliformes | Anguillidae | Anguilla marmorata | native | Giant mottled eel | Moa kembang |
| Anguilliformes | Anguillidae | Anguilla nebulosa | native | Mottled eel | |
| Anguilliformes | Anguillidae | Anguilla obscura | native | Pacific shortfinned eel | |
| Anguilliformes | Anguillidae | Anguilla reinhardtii | native | Speckled longfin eel | |
| Lophiiformes | Antennariidae | Antennarius biocellatus | native | Brackishwater frogfish | Brackish water anglerfish |
| Cyprinodontiformes | Aplocheilidae | Aplocheilus panchax | native | Blue panchax | Kepala timah |
| Perciformes | Apogonidae | Apogon hyalosoma | native | Humpbacked cardinalfish | Gelagah laut |
| Perciformes | Apogonidae | Apogon lateralis | native | Humpback cardinal | Coastal cardinalfish |
| Cypriniformes | Cyprinidae | Aristichthys nobilis | introduced | Bighead carp | |
| Siluriformes | Ariidae | Arius intermedius | native | Ikan atit | |
| Siluriformes | Ariidae | Arius macrorhynchus | native | Sharp-nosed catfish | |
| Siluriformes | Ariidae | Arius microcephalus | native | Squirrelheaded catfish | |
| Siluriformes | Ariidae | Arius nudidens | native | ||
| Siluriformes | Ariidae | Arius subrostratus | native | Shovelnose sea catfish | |
| Pleuronectiformes | Soleidae | Aseraggodes klunzingeri | native | Tailed sole | |
| Perciformes | Gobiidae | Aulopareia unicolor | native | ||
| Tetraodontiformes | Tetraodontidae | Auriglobus amabilis | native | ||
| Tetraodontiformes | Tetraodontidae | Auriglobus modestus | native | ||
| Tetraodontiformes | Tetraodontidae | Auriglobus nefastus | native | Greenbottle pufferfish | Buntal mas |
| Tetraodontiformes | Tetraodontidae | Auriglobus remotus | native | ||
| Perciformes | Gobiidae | Awaous grammepomus | native | Scribbled goby | |
| Perciformes | Gobiidae | Awaous guamensis | questionable | ||
| Perciformes | Gobiidae | Awaous melanocephalus | native | Largesnout goby | |
| Perciformes | Gobiidae | Awaous personatus | native | ||
| Siluriformes | Sisoridae | Bagarius bagarius | native | Dwarf goonch | Kelaling |
| Siluriformes | Sisoridae | Bagarius yarrelli | native | Goonch | |
| Siluriformes | Bagridae | Bagrichthys hypselopterus | native | Blacklancer catfish | Baung layar |
| Siluriformes | Bagridae | Bagrichthys macracanthus | native | Black lancer catfish | |
| Siluriformes | Bagridae | Bagrichthys macropterus | native | False black lancer | Ikan pisang |
| Siluriformes | Bagridae | Bagrichthys micranodus | native | Ikan pisang | |
| Siluriformes | Bagridae | Bagrichthys vaillantii | native | ||
| Siluriformes | Bagridae | Bagroides melapterus | native | Baung tikus | |
| Cypriniformes | Cyprinidae | Balantiocheilos melanopterus | native | Tricolor sharkminnow | Batang buro |
| Cypriniformes | Cyprinidae | Barbichthys laevis | native | Sucker barb | Kungkum |
| Cypriniformes | Cyprinidae | Barbodes balleroides | native | Wader merah | |
| Cypriniformes | Cyprinidae | Barbodes belinka | native | Belingka | |
| Cypriniformes | Cyprinidae | Barbodes mahakkamensis | native | ||
| Cypriniformes | Cyprinidae | Barbodes platysoma | native | ||
| Cypriniformes | Cyprinidae | Barbodes strigatus | native | ||
| Cypriniformes | Cyprinidae | Barbodes sunieri | native | ||
| Cypriniformes | Cyprinidae | Barbonymus collingwoodii | native | Kepiat | |
| Cypriniformes | Cyprinidae | Barbonymus gonionotus | native | Java barb | Bader putihan |
| Cypriniformes | Cyprinidae | Barbonymus schwanenfeldii | native | Tinfoil barb | Ikan lempam |
| Cypriniformes | Balitoridae | Barbucca diabolica | native | ||
| Cypriniformes | Cyprinidae | Barilius borneensis | native | ||
| Siluriformes | Ariidae | Batrachocephalus mino | native | Beardless sea catfish | Manyung kodok |
| Perciformes | Eleotridae | Belobranchus belobranchus | native | Throat-spine gudgeon | |
| Siluriformes | Siluridae | Belodontichthys dinema | native | Lais tabirin | |
| Perciformes | Osphronemidae | Belontia hasselti | native | Malay combtail | Ketoprak |
| Perciformes | Osphronemidae | Betta akarensis | native | Akar betta | |
| Perciformes | Osphronemidae | Betta albimarginata | native | ||
| Perciformes | Osphronemidae | Betta anabatoides | native | Giant betta | Melantau |
| Perciformes | Osphronemidae | Betta antoni | native | ||
| Perciformes | Osphronemidae | Betta aurigans | native | ||
| Perciformes | Osphronemidae | Betta balunga | native | ||
| Perciformes | Osphronemidae | Betta bellica | native | Slim betta | |
| Perciformes | Osphronemidae | Betta breviobesus | native | ||
| Perciformes | Osphronemidae | Betta brownorum | native | ||
| Perciformes | Osphronemidae | Betta burdigala | native | ||
| Perciformes | Osphronemidae | Betta channoides | native | ||
| Perciformes | Osphronemidae | Betta chloropharynx | native | ||
| Perciformes | Osphronemidae | Betta coccina | native | ||
| Perciformes | Osphronemidae | Betta compuncta | native | ||
| Perciformes | Osphronemidae | Betta cracens | native | ||
| Perciformes | Osphronemidae | Betta dimidiata | native | Empala | |
| Perciformes | Osphronemidae | Betta edithae | endemic | ||
| Perciformes | Osphronemidae | Betta enisae | native | Empala | |
| Perciformes | Osphronemidae | Betta falx | native | ||
| Perciformes | Osphronemidae | Betta foerschi | endemic | ||
| Perciformes | Osphronemidae | Betta fusca | native | Dusky betta | |
| Perciformes | Osphronemidae | Betta hipposideros | native | ||
| Perciformes | Osphronemidae | Betta ideii | native | ||
| Perciformes | Osphronemidae | Betta imbellis | native | Crescent betta | Laga |
| Perciformes | Osphronemidae | Betta krataios | native | ||
| Perciformes | Osphronemidae | Betta lehi | native | ||
| Perciformes | Osphronemidae | Betta macrostoma | native | Spotfin betta | |
| Perciformes | Osphronemidae | Betta mandor | native | ||
| Perciformes | Osphronemidae | Betta miniopinna | native | ||
| Perciformes | Osphronemidae | Betta obscura | native | ||
| Perciformes | Osphronemidae | Betta ocellata | native | ||
| Perciformes | Osphronemidae | Betta pallifina | native | ||
| Perciformes | Osphronemidae | Betta patoti | native | ||
| Perciformes | Osphronemidae | Betta picta | native | Spotted betta | Betah |
| Perciformes | Osphronemidae | Betta pinguis | native | Empala | |
| Perciformes | Osphronemidae | Betta pugnax | native | Penang betta | |
| Perciformes | Osphronemidae | Betta raja | native | ||
| Perciformes | Osphronemidae | Betta renata | native | ||
| Perciformes | Osphronemidae | Betta rubra | native | Toba betta | Laga |
| Perciformes | Osphronemidae | Betta rutilans | native | ||
| Perciformes | Osphronemidae | Betta schalleri | endemic | ||
| Perciformes | Osphronemidae | Betta simorum | native | ||
| Perciformes | Osphronemidae | Betta spilotogena | native | ||
| Perciformes | Osphronemidae | Betta splendens | introduced | Siamese fighting fish | |
| Perciformes | Osphronemidae | Betta strohi | native | ||
| Perciformes | Osphronemidae | Betta taeniata | native | Borneo betta | Empala |
| Perciformes | Osphronemidae | Betta uberis | native | ||
| Perciformes | Osphronemidae | Betta unimaculata | native | Howong betta | |
| Synbranchiformes | Chaudhuriidae | Bihunichthys monopteroides | native | ||
| Perciformes | Sciaenidae | Boesemania microlepis | native | Boeseman croaker | Terusan |
| Perciformes | Gobiidae | Boleophthalmus boddarti | native | Boddart's goggle-eyed goby | Lunjat |
| Cypriniformes | Cyprinidae | Boraras brigittae | native | ||
| Cypriniformes | Cyprinidae | Boraras maculatus | native | Dwarf rasbora | |
| Cypriniformes | Cyprinidae | Boraras merah | native | ||
| Cypriniformes | Cyprinidae | Boraras urophthalmoides | native | Least rasbora | |
| Perciformes | Eleotridae | Bostrychus aruensis | endemic | Island gudgeon | |
| Perciformes | Eleotridae | Bostrychus microphthalmus | native | ||
| Perciformes | Eleotridae | Bostrychus strigogenys | native | Striped-cheek gudgeon | |
| Perciformes | Eleotridae | Bostrychus zonatus | native | Barred gudgeon | |
| Pleuronectiformes | Soleidae | Brachirus orientalis | native | Oriental sole | |
| Pleuronectiformes | Soleidae | Brachirus panoides | native | Lidah | |
| Perciformes | Gobiidae | Brachyamblyopus brachysoma | native | ||
| Perciformes | Gobiidae | Brachygobius aggregatus | native | Schooling bumblebee goby | |
| Perciformes | Gobiidae | Brachygobius doriae | native | ||
| Perciformes | Gobiidae | Brachygobius kabiliensis | native | Kabili bumblebee goby | |
| Perciformes | Gobiidae | Brachygobius sabanus | native | ||
| Perciformes | Gobiidae | Brachygobius xanthomelas | native | ||
| Perciformes | Gobiidae | Brachygobius xanthozonus | native | Bumblebee fish | |
| Siluriformes | Akysidae | Breitensteinia cessator | native | Dekat | |
| Siluriformes | Akysidae | Breitensteinia hypselurus | native | ||
| Siluriformes | Akysidae | Breitensteinia insignis | native | ||
| Siluriformes | Ariidae | Brustiarius solidus | native | Hard-palate catfish | |
| Perciformes | Eleotridae | Bunaka gyrinoides | native | Greenback gauvina | Lapuso |
| Perciformes | Eleotridae | Butis amboinensis | native | Olive flathead-gudgeon | Olive flathead-gudgeon |
| Perciformes | Eleotridae | Butis butis | native | Duckbill sleeper | Belosoh |
| Perciformes | Eleotridae | Butis gymnopomus | native | Latåré | |
| Perciformes | Eleotridae | Butis koilomatodon | native | Mud sleeper | Puntang |
| Perciformes | Gobiidae | Calamiana kabilia | native | ||
| Perciformes | Gobiidae | Callogobius stellatus | native | ||
| Perciformes | Gobiidae | Caragobius urolepis | native | Scaleless worm goby | |
| Cypriniformes | Cyprinidae | Carassius auratus auratus | introduced | Goldfish | |
| Carcharhiniformes | Carcharhinidae | Carcharhinus leucas | native | Bull shark | Cucut bekeman |
| Tetraodontiformes | Tetraodontidae | Carinotetraodon irrubesco | native | ||
| Tetraodontiformes | Tetraodontidae | Carinotetraodon lorteti | native | Redeye puffer | |
| Siluriformes | Ariidae | Cephalocassis borneensis | native | Anak dukang | |
| Siluriformes | Ariidae | Cephalocassis melanochir | native | Gugup | |
| Siluriformes | Siluridae | Ceratoglanis scleronema | native | Lais hitam | |
| Mugiliformes | Mugilidae | Cestraeus goldiei | native | Goldie river mullet | |
| Mugiliformes | Mugilidae | Cestraeus oxyrhyncus | native | Sharp-nosed river mullet | |
| Mugiliformes | Mugilidae | Cestraeus plicatilis | native | Lobed river mullet | |
| Siluriformes | Chacidae | Chaca bankanensis | native | Angler catfish | Kebingkung |
| Siluriformes | Chacidae | Chaca chaca | native | Squarehead catfish | Tuka |
| Perciformes | Channidae | Channa bankanensis | native | Runtuk | |
| Perciformes | Channidae | Channa cyanospilos | native | ||
| Perciformes | Channidae | Channa gachua | native | Boga | |
| Perciformes | Channidae | Channa lucius | native | Runtuk | |
| Perciformes | Channidae | Channa marulioides | native | Piyang | |
| Perciformes | Channidae | Channa marulius | native | Great snakehead | |
| Perciformes | Channidae | Channa melanoptera | native | ||
| Perciformes | Channidae | Channa melasoma | native | Black snakehead | |
| Perciformes | Channidae | Channa micropeltes | native | Giant snakehead | Kamal fish |
| Perciformes | Channidae | Channa orientalis | native | Walking snakehead | |
| Perciformes | Channidae | Channa pleurophthalma | native | Kerandang | |
| Perciformes | Channidae | Channa striata | native | Snakehead murrel | Bado |
| Cypriniformes | Cyprinidae | Chela laubuca | native | Indian glass barb | |
| Cypriniformes | Cyprinidae | Chela maassi | native | Lipi | |
| Synbranchiformes | Chaudhuriidae | Chendol keelini | native | ||
| Synbranchiformes | Chaudhuriidae | Chendol lubricus | native | ||
| Atheriniformes | Melanotaeniidae | Chilatherina alleni | native | ||
| Atheriniformes | Melanotaeniidae | Chilatherina bleheri | endemic | Bleher's rainbowfish | |
| Atheriniformes | Melanotaeniidae | Chilatherina crassispinosa | native | Silver rainbowfish | |
| Atheriniformes | Melanotaeniidae | Chilatherina fasciata | native | Barred rainbowfish | |
| Atheriniformes | Melanotaeniidae | Chilatherina lorentzii | native | Lorentz's rainbowfish | |
| Atheriniformes | Melanotaeniidae | Chilatherina pricei | native | ||
| Atheriniformes | Melanotaeniidae | Chilatherina sentaniensis | endemic | Sentani rainbowfish | |
| Osteoglossiformes | Notopteridae | Chitala borneensis | native | ||
| Osteoglossiformes | Notopteridae | Chitala chitala | misidentification | Clown knifefish | Lopis |
| Osteoglossiformes | Notopteridae | Chitala hypselonotus | native | Belida | |
| Osteoglossiformes | Notopteridae | Chitala lopis | native | Giant featherback | Pla tu |
| Osteoglossiformes | Notopteridae | Chitala ornata | native | Clown featherback | |
| Tetraodontiformes | Tetraodontidae | Chonerhinos silus | native | ||
| Cypriniformes | Cobitidae | Chromobotia macracanthus | endemic | Clown loach | Entebering |
| Siluriformes | Ariidae | Cinetodus carinatus | native | Comb-spined catfish | |
| Siluriformes | Ariidae | Cinetodus conorhynchus | endemic | Lorentz catfish | |
| Siluriformes | Ariidae | Cinetodus froggatti | native | Small-mouthed salmon catfish | |
| Cypriniformes | Cyprinidae | Cirrhinus chinensis | not established | Chinese mud carp | |
| Siluriformes | Clariidae | Clarias batrachus | native | Walking catfish | Ikan lele |
| Siluriformes | Clariidae | Clarias gariepinus | introduced | North African catfish | |
| Siluriformes | Clariidae | Clarias insolitus | native | ||
| Siluriformes | Clariidae | Clarias intermedius | native | ||
| Siluriformes | Clariidae | Clarias kapuasensis | native | ||
| Siluriformes | Clariidae | Clarias leiacanthus | native | Kelih | |
| Siluriformes | Clariidae | Clarias meladerma | native | Blackskin catfish | Duri |
| Siluriformes | Clariidae | Clarias microstomus | native | ||
| Siluriformes | Clariidae | Clarias nieuhofii | native | Itu-itu | |
| Siluriformes | Clariidae | Clarias nigricans | native | ||
| Siluriformes | Clariidae | Clarias olivaceus | native | ||
| Siluriformes | Clariidae | Clarias pseudoleiacanthus | native | ||
| Siluriformes | Clariidae | Clarias pseudonieuhofii | endemic | ||
| Siluriformes | Clariidae | Clarias teijsmanni | native | Itu-itu | |
| Clupeiformes | Clupeidae | Clupeichthys bleekeri | native | Kapuas river sprat | Bilis |
| Clupeiformes | Clupeidae | Clupeichthys goniognathus | native | Sumatran river sprat | Bilis tamban |
| Clupeiformes | Clupeidae | Clupeichthys perakensis | native | Perak river sprat | |
| Clupeiformes | Clupeidae | Clupeoides borneensis | native | Borneo river sprat | Bilis |
| Clupeiformes | Clupeidae | Clupeoides hypselosoma | native | Kalimantan river sprat | |
| Clupeiformes | Clupeidae | Clupeoides papuensis | native | Papuan river sprat | |
| Clupeiformes | Clupeidae | Clupeoides venulosus | native | West Irian river sprat | |
| Siluriformes | Ariidae | Cochlefelis danielsi | native | Daniel's catfish | |
| Siluriformes | Ariidae | Cochlefelis spatula | native | Duckbilled catfish | |
| Clupeiformes | Engraulidae | Coilia borneensis | native | Bornean grenadier anchovy | Gunjing |
| Clupeiformes | Engraulidae | Coilia lindmani | native | Lindman's grenadier anchovy | |
| Characiformes | Characidae | Colossoma macropomum | not established | Tambaqui | |
| Clupeiformes | Clupeidae | Corica laciniata | native | Bangkok river sprat | |
| Clupeiformes | Clupeidae | Corica soborna | native | Ganges river sprat | |
| Cypriniformes | Cyprinidae | Cosmochilus falcifer | native | ||
| Atheriniformes | Atherinidae | Craterocephalus nouhuysi | native | Mountain hardyhead | |
| Atheriniformes | Atherinidae | Craterocephalus randi | native | Kubuna hardyhead | |
| Mugiliformes | Mugilidae | Crenimugil heterocheilos | native | Half fringelip mullet | |
| Cypriniformes | Cyprinidae | Crossocheilus cobitis | native | Bantak batu | |
| Cypriniformes | Cyprinidae | Crossocheilus gnathopogon | native | ||
| Cypriniformes | Cyprinidae | Crossocheilus langei | native | ||
| Cypriniformes | Cyprinidae | Crossocheilus nigriloba | native | ||
| Cypriniformes | Cyprinidae | Crossocheilus oblongus | native | Siamese flying fox | Bantak batu |
| Cypriniformes | Cyprinidae | Ctenopharyngodon idella | introduced | Grass carp | Tonggan |
| Cypriniformes | Cyprinidae | Cyclocheilichthys apogon | native | Beardless barb | Engkaras |
| Cypriniformes | Cyprinidae | Cyclocheilichthys armatus | native | Buin | |
| Cypriniformes | Cyprinidae | Cyclocheilichthys enoplus | native | Seren | |
| Cypriniformes | Cyprinidae | Cyclocheilichthys heteronema | native | Paku | |
| Cypriniformes | Cyprinidae | Cyclocheilichthys janthochir | native | Jajau | |
| Cypriniformes | Cyprinidae | Cyclocheilichthys repasson | native | Buin | |
| Pleuronectiformes | Cynoglossidae | Cynoglossus feldmanni | native | River tonguesole | Ikan Lidah |
| Pleuronectiformes | Cynoglossidae | Cynoglossus heterolepis | native | Freshwater tongue sole | |
| Pleuronectiformes | Cynoglossidae | Cynoglossus kapuasensis | native | Kenilah | |
| Pleuronectiformes | Cynoglossidae | Cynoglossus microlepis | native | Smallscale tonguesole | lkan Lidah |
| Pleuronectiformes | Cynoglossidae | Cynoglossus waandersii | native | Kenilah | |
| Cypriniformes | Cyprinidae | Cyprinus carpio carpio | introduced | Common carp | Ihan mas |
| Cypriniformes | Cyprinidae | Danio albolineatus | native | Pearl danio | Tiga macam |
| Perciformes | Datnioididae | Datnioides campbelli | native | ||
| Perciformes | Datnioididae | Datnioides microlepis | native | Finescale tigerfish | Ringan |
| Perciformes | Datnioididae | Datnioides polota | native | ||
| Beloniformes | Hemiramphidae | Dermogenys montana | native | ||
| Beloniformes | Hemiramphidae | Dermogenys orientalis | native | ||
| Beloniformes | Hemiramphidae | Dermogenys pusilla | native | Wrestling halfbeak | Julung-julung |
| Beloniformes | Hemiramphidae | Dermogenys sumatrana | native | ||
| Beloniformes | Hemiramphidae | Dermogenys vogti | native | ||
| Cypriniformes | Cyprinidae | Diplocheilichthys jentinkii | native | Kulung | |
| Cypriniformes | Cyprinidae | Diplocheilichthys pleurotaenia | native | Tebulit | |
| Syngnathiformes | Syngnathidae | Doryichthys boaja | native | Penyucuk telinga buaya | |
| Syngnathiformes | Syngnathidae | Doryichthys deokhatoides | native | ||
| Syngnathiformes | Syngnathidae | Doryichthys heterosoma | endemic | ||
| Syngnathiformes | Syngnathidae | Doryichthys martensii | native | Penyucuk telinga buaya | |
| Perciformes | Gobiidae | Drombus globiceps | native | ||
| Perciformes | Gobiidae | Drombus triangularis | native | ||
| Anguilliformes | Muraenidae | Echidna rhodochilus | native | Pink-lipped moray eel | |
| Cypriniformes | Cyprinidae | Eirmotus furvus | native | ||
| Cypriniformes | Cyprinidae | Eirmotus insignis | native | ||
| Cypriniformes | Cyprinidae | Eirmotus isthmus | native | ||
| Cypriniformes | Cyprinidae | Eirmotus octozona | native | Bengah | |
| Perciformes | Eleotridae | Eleotris acanthopoma | native | ||
| Perciformes | Eleotridae | Eleotris brachyurus | native | ||
| Perciformes | Eleotridae | Eleotris fusca | native | Dusky sleeper | Belosoh |
| Perciformes | Eleotridae | Eleotris melanosoma | native | Broadhead sleeper | Black gudgeon |
| Perciformes | Eleotridae | Eleotris melanura | native | ||
| Perciformes | Eleotridae | Eleotris pseudacanthopomus | native | ||
| Cypriniformes | Balitoridae | Ellopostoma megalomycter | native | Engkrunyuk | |
| Siluriformes | Clariidae | Encheloclarias baculum | native | ||
| Siluriformes | Clariidae | Encheloclarias kelioides | native | ||
| Siluriformes | Clariidae | Encheloclarias tapeinopterus | native | ||
| Siluriformes | Clariidae | Encheloclarias velatus | native | ||
| Cypriniformes | Cyprinidae | Epalzeorhynchos kalopterus | native | Flying fox | Seluang hantu |
| Perciformes | Serranidae | Epinephelus polystigma | native | White-dotted grouper | |
| Perciformes | Cichlidae | Etroplus suratensis | not established | Green chromide | |
| Perciformes | Gobiidae | Eugnathogobius oligactis | native | ||
| Perciformes | Gobiidae | Eugnathogobius paludosus | native | ||
| Perciformes | Gobiidae | Eugnathogobius siamensis | native | ||
| Perciformes | Gobiidae | Favonigobius reichei | native | Indo-Pacific tropical sand goby | |
| Cyprinodontiformes | Poeciliidae | Gambusia affinis | not established | Mosquitofish | |
| Cypriniformes | Cyprinidae | Garra borneensis | native | ||
| Cypriniformes | Balitoridae | Gastromyzon borneensis | native | Tapa bulu | |
| Cypriniformes | Balitoridae | Gastromyzon contractus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon ctenocephalus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon danumensis | native | ||
| Cypriniformes | Balitoridae | Gastromyzon embalohensis | native | ||
| Cypriniformes | Balitoridae | Gastromyzon fasciatus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon lepidogaster | native | ||
| Cypriniformes | Balitoridae | Gastromyzon megalepis | native | ||
| Cypriniformes | Balitoridae | Gastromyzon monticola | native | ||
| Cypriniformes | Balitoridae | Gastromyzon praestans | native | ||
| Cypriniformes | Balitoridae | Gastromyzon psiloetron | native | ||
| Cypriniformes | Balitoridae | Gastromyzon punctulatus | native | Hillstream loach | |
| Cypriniformes | Balitoridae | Gastromyzon ridens | native | ||
| Cypriniformes | Balitoridae | Gastromyzon russulus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon zebrinus | native | ||
| Perciformes | Gerreidae | Gerres filamentosus | native | Whipfin silverbiddy | Kapas besar |
| Cypriniformes | Balitoridae | Glaniopsis denudata | native | ||
| Cypriniformes | Balitoridae | Glaniopsis gossei | native | ||
| Cypriniformes | Balitoridae | Glaniopsis hanitschi | native | ||
| Cypriniformes | Balitoridae | Glaniopsis multiradiata | native | ||
| Perciformes | Apogonidae | Glossamia aprion | native | Mouth almighty | |
| Perciformes | Apogonidae | Glossamia beauforti | endemic | Beaufort's mouth almighty | |
| Perciformes | Apogonidae | Glossamia gjellerupi | native | Gjellerup's mouth almighty | |
| Perciformes | Apogonidae | Glossamia heurni | native | ||
| Perciformes | Apogonidae | Glossamia sandei | native | Sande's mouth almighty | Serinding |
| Perciformes | Apogonidae | Glossamia trifasciata | native | Three-barred mouth almighty | |
| Perciformes | Apogonidae | Glossamia wichmanni | native | Wichmann's mouth almighty | |
| Perciformes | Gobiidae | Glossogobius aureus | native | Golden tank goby | |
| Perciformes | Gobiidae | Glossogobius bicirrhosus | native | ||
| Perciformes | Gobiidae | Glossogobius bulmeri | native | Bulmer's goby | |
| Perciformes | Gobiidae | Glossogobius celebius | native | Celebes goby | |
| Perciformes | Gobiidae | Glossogobius circumspectus | native | Circumspect goby | |
| Perciformes | Gobiidae | Glossogobius flavipinnis | endemic | ||
| Perciformes | Gobiidae | Glossogobius giuris | native | Tank goby | Ploso |
| Perciformes | Gobiidae | Glossogobius hoesei | endemic | Hoese's goby | |
| Perciformes | Gobiidae | Glossogobius intermedius | endemic | ||
| Perciformes | Gobiidae | Glossogobius matanensis | endemic | ||
| Atheriniformes | Melanotaeniidae | Glossolepis dorityi | native | ||
| Atheriniformes | Melanotaeniidae | Glossolepis incisus | endemic | Red rainbowfish | |
| Atheriniformes | Melanotaeniidae | Glossolepis leggetti | native | Leggett's rainbowfish | Leggett's rainbowfish |
| Atheriniformes | Melanotaeniidae | Glossolepis multisquamata | native | Sepik rainbowfish | |
| Atheriniformes | Melanotaeniidae | Glossolepis pseudoincisus | endemic | Tami River rainbowfish | |
| Siluriformes | Sisoridae | Glyptothorax exodon | native | ||
| Siluriformes | Sisoridae | Glyptothorax major | native | Kalakotai | |
| Siluriformes | Sisoridae | Glyptothorax platypogon | native | ||
| Siluriformes | Sisoridae | Glyptothorax platypogonides | native | ||
| Siluriformes | Sisoridae | Glyptothorax plectilis | native | ||
| Siluriformes | Sisoridae | Glyptothorax tiong | native | ||
| Perciformes | Gobiidae | Gobiopterus brachypterus | native | ||
| Perciformes | Gobiidae | Gobiopterus chuno | native | ||
| Perciformes | Gobiidae | Gobius tigrellus | endemic | ||
| Perciformes | Ambassidae | Gymnochanda filamentosa | native | Anak senara | |
| Perciformes | Ambassidae | Gymnochanda flamea | native | Anak senara | |
| Perciformes | Ambassidae | Gymnochanda limi | native | ||
| Anguilliformes | Muraenidae | Gymnothorax polyuranodon | native | Freshwater moray | |
| Cypriniformes | Gyrinocheilidae | Gyrinocheilus pustulosus | endemic | Borneo algae-eater | Telure |
| Cypriniformes | Cyprinidae | Hampala ampalong | native | ||
| Cypriniformes | Cyprinidae | Hampala bimaculata | native | Dungan | |
| Cypriniformes | Cyprinidae | Hampala lopezi | native | ||
| Cypriniformes | Cyprinidae | Hampala macrolepidota | native | Hampala barb | Hampal |
| Siluriformes | Pangasiidae | Helicophagus typus | native | Paten | |
| Siluriformes | Pangasiidae | Helicophagus waandersii | native | Patin muncung | |
| Perciformes | Helostomatidae | Helostoma temminkii | native | Kissing gourami | Bawan |
| Siluriformes | Ariidae | Hemiarius dioctes | native | Warrior catfish | |
| Siluriformes | Ariidae | Hemiarius stormii | native | Armoured sea catfish | |
| Siluriformes | Bagridae | Hemibagrus baramensis | native | ||
| Siluriformes | Bagridae | Hemibagrus bongan | native | ||
| Siluriformes | Bagridae | Hemibagrus caveatus | native | ||
| Siluriformes | Bagridae | Hemibagrus hoevenii | native | ||
| Siluriformes | Bagridae | Hemibagrus johorensis | native | ||
| Siluriformes | Bagridae | Hemibagrus nemurus | native | Asian redtail catfish | Baung putih |
| Siluriformes | Bagridae | Hemibagrus olyroides | native | Patik kerapak | |
| Siluriformes | Bagridae | Hemibagrus planiceps | native | Baung kuning | |
| Siluriformes | Bagridae | Hemibagrus sabanus | native | ||
| Siluriformes | Bagridae | Hemibagrus velox | native | ||
| Siluriformes | Bagridae | Hemibagrus wyckii | native | Baung burai | |
| Perciformes | Gobiidae | Hemigobius hoevenii | native | ||
| Siluriformes | Bagridae | Hemileiocassis panjang | native | ||
| Siluriformes | Ariidae | Hemipimelodus macrocephalus | native | ||
| Beloniformes | Hemiramphidae | Hemirhamphodon chrysopunctatus | native | ||
| Beloniformes | Hemiramphidae | Hemirhamphodon kapuasensis | endemic | ||
| Beloniformes | Hemiramphidae | Hemirhamphodon phaiosoma | native | ||
| Beloniformes | Hemiramphidae | Hemirhamphodon pogonognathus | native | Kenyulung | |
| Beloniformes | Hemiramphidae | Hemirhamphodon tengah | native | ||
| Siluriformes | Siluridae | Hemisilurus heterorhynchus | native | Lais timah | |
| Siluriformes | Siluridae | Hemisilurus moolenburghi | native | Silung kuda | |
| Perciformes | Terapontidae | Hephaestus habbemai | native | Mountain grunter | |
| Perciformes | Terapontidae | Hephaestus lineatus | endemic | Lined grunter | |
| Perciformes | Terapontidae | Hephaestus obtusifrons | native | ||
| Perciformes | Terapontidae | Hephaestus roemeri | endemic | Röemer's grunter | |
| Rajiformes | Dasyatidae | Himantura chaophraya | native | Freshwater whipray | Pari |
| Rajiformes | Dasyatidae | Himantura oxyrhyncha | native | Marbled whipray | |
| Rajiformes | Dasyatidae | Himantura signifer | native | White-edge freshwater whip ray | Pari |
| Syngnathiformes | Syngnathidae | Hippichthys heptagonus | native | Belly pipefish | |
| Syngnathiformes | Syngnathidae | Hippichthys penicillus | native | Beady pipefish | |
| Cypriniformes | Balitoridae | Homaloptera gymnogaster | endemic | Julung | |
| Cypriniformes | Balitoridae | Homaloptera heterolepis | native | ||
| Cypriniformes | Balitoridae | Homaloptera nebulosa | native | Susuh batang | |
| Cypriniformes | Balitoridae | Homaloptera ocellata | native | ||
| Cypriniformes | Balitoridae | Homaloptera ogilviei | native | ||
| Cypriniformes | Balitoridae | Homaloptera ophiolepis | native | Lelekat | |
| Cypriniformes | Balitoridae | Homaloptera orthogoniata | native | Susuh batang | |
| Cypriniformes | Balitoridae | Homaloptera ripleyi | native | ||
| Cypriniformes | Balitoridae | Homaloptera stephensoni | native | Susuh batang | |
| Cypriniformes | Balitoridae | Homaloptera tweediei | native | ||
| Cypriniformes | Balitoridae | Homaloptera vanderbilti | native | ||
| Cypriniformes | Balitoridae | Homaloptera wassinkii | native | ||
| Cypriniformes | Balitoridae | Homaloptera weberi | native | ||
| Cypriniformes | Balitoridae | Homaloptera yuwonoi | native | ||
| Cypriniformes | Balitoridae | Homaloptera zollingeri | native | Selusur | |
| Siluriformes | Bagridae | Hyalobagrus flavus | native | ||
| Siluriformes | Bagridae | Hyalobagrus leiacanthus | native | ||
| Siluriformes | Bagridae | Hyalobagrus ornatus | native | ||
| Cypriniformes | Balitoridae | Hypergastromyzon eubranchus | native | ||
| Cypriniformes | Balitoridae | Hypergastromyzon humilis | native | ||
| Cypriniformes | Cyprinidae | Hypophthalmichthys molitrix | not established | Silver carp | |
| Perciformes | Eleotridae | Hypseleotris guentheri | native | Rainbow gudgeon | |
| Syngnathiformes | Syngnathidae | Ichthyocampus carce | native | Sundoprono | |
| Clupeiformes | Pristigasteridae | Ilisha megaloptera | native | Bigeye ilisha | Belia mata |
| Atheriniformes | Melanotaeniidae | Iriatherina werneri | native | Threadfin rainbowfish | |
| Perciformes | Gobiidae | Istigobius diadema | native | ||
| Perciformes | Sciaenidae | Johnius australis | native | Bottlenose jewfish | |
| Perciformes | Sciaenidae | Johnius borneensis | native | Sharpnose hammer croaker | |
| Perciformes | Sciaenidae | Johnius coitor | native | Coitor croaker | |
| Perciformes | Sciaenidae | Johnius trachycephalus | native | Leaftail croaker | |
| Cypriniformes | Cyprinidae | Kalimantania lawak | native | Lelawak | |
| Siluriformes | Ariidae | Ketengus typus | native | Bigmouth sea catfish | Keting |
| Cypriniformes | Cobitidae | Kottelatlimia katik | native | ||
| Cypriniformes | Cobitidae | Kottelatlimia pristes | native | Emplunyu | |
| Siluriformes | Siluridae | Kryptopterus bicirrhis | native | Glass catfish | Lais limpok |
| Siluriformes | Siluridae | Kryptopterus cryptopterus | native | Lais juara | |
| Siluriformes | Siluridae | Kryptopterus lais | native | Lais | |
| Siluriformes | Siluridae | Kryptopterus limpok | native | Long-barbel sheatfish | Lais kerak |
| Siluriformes | Siluridae | Kryptopterus lumholtzi | native | ||
| Siluriformes | Siluridae | Kryptopterus macrocephalus | native | Striped glass catfish | Lais |
| Siluriformes | Siluridae | Kryptopterus minor | native | Ghost Catfish | Lais kaca |
| Siluriformes | Siluridae | Kryptopterus mononema | native | ||
| Siluriformes | Siluridae | Kryptopterus palembangensis | native | ||
| Siluriformes | Siluridae | Kryptopterus piperatus | native | ||
| Siluriformes | Siluridae | Kryptopterus sabanus | native | ||
| Siluriformes | Siluridae | Kryptopterus schilbeides | native | Lais kuning | |
| Perciformes | Kuhliidae | Kuhlia marginata | native | Dark-margined flagtail | Gadidi |
| Perciformes | Kuhliidae | Kuhlia rupestris | native | Rock flagtail | |
| Perciformes | Kurtidae | Kurtus gulliveri | native | Nurseryfish | |
| Perciformes | Kurtidae | Kurtus indicus | native | Indian hump head | Cinta madu |
| Cypriniformes | Cyprinidae | Labeo chrysophekadion | native | Ikan arang | |
| Cypriniformes | Cyprinidae | Labeo erythropterus | native | Wadon gunung | |
| Cypriniformes | Cyprinidae | Labeo moszkowskii | native | ||
| Cypriniformes | Cyprinidae | Labeo pietschmanni | native | ||
| Cypriniformes | Cyprinidae | Labiobarbus fasciatus | native | Masik | |
| Cypriniformes | Cyprinidae | Labiobarbus festivus | native | Signal barb | Hampras |
| Cypriniformes | Cyprinidae | Labiobarbus lamellifer | native | ||
| Cypriniformes | Cyprinidae | Labiobarbus leptocheila | native | Millem | |
| Cypriniformes | Cyprinidae | Labiobarbus ocellatus | native | Lamba | |
| Cypriniformes | Cyprinidae | Labiobarbus sabanus | questionable | ||
| Perciformes | Terapontidae | Lagusia micracanthus | native | Citopeng | |
| Siluriformes | Schilbeidae | Laides hexanema | native | Lais jengot | |
| Anguilliformes | Ophichthidae | Lamnostoma kampeni | native | Freshwater snake-eel | |
| Anguilliformes | Ophichthidae | Lamnostoma mindora | native | ||
| Perciformes | Latidae | Lates calcarifer | native | Barramundi | Kakap |
| Siluriformes | Bagridae | Leiocassis aculeatus | native | ||
| Siluriformes | Bagridae | Leiocassis macropterus | native | ||
| Siluriformes | Bagridae | Leiocassis micropogon | native | Tugok | |
| Siluriformes | Bagridae | Leiocassis poecilopterus | native | Baung duri | |
| Siluriformes | Bagridae | Leiocassis saravacensis | native | ||
| Siluriformes | Bagridae | Leiocassis tenebricus | native | ||
| Perciformes | Gobiidae | Lentipes adelphizonus | native | ||
| Perciformes | Gobiidae | Lentipes crittersius | native | ||
| Perciformes | Gobiidae | Lentipes dimetrodon | native | ||
| Perciformes | Gobiidae | Lentipes multiradiatus | native | ||
| Perciformes | Gobiidae | Lentipes whittenorum | native | ||
| Cypriniformes | Cobitidae | Lepidocephalichthys hasselti | native | Seren | |
| Cypriniformes | Cobitidae | Lepidocephalichthys lorentzi | native | ||
| Cypriniformes | Cobitidae | Lepidocephalichthys sandakanensis | native | ||
| Cypriniformes | Cobitidae | Lepidocephalichthys tomaculum | native | ||
| Cypriniformes | Cobitidae | Lepidocephalus macrochir | native | ||
| Cypriniformes | Cobitidae | Lepidocephalus spectrum | native | ||
| Cypriniformes | Cyprinidae | Leptobarbus hoevenii | native | Mad barb | Jelawat |
| Cypriniformes | Cyprinidae | Leptobarbus hosii | native | ||
| Cypriniformes | Cyprinidae | Leptobarbus melanopterus | native | Bundung | |
| Cypriniformes | Cyprinidae | Leptobarbus melanotaenia | native | Piam-piam | |
| Scorpaeniformes | Synanceiidae | Leptosynanceia asteroblepa | native | ||
| Mugiliformes | Mugilidae | Liza alata | native | Diamond mullet | |
| Mugiliformes | Mugilidae | Liza macrolepis | native | Largescale mullet | |
| Mugiliformes | Mugilidae | Liza melinoptera | native | Otomebora mullet | |
| Mugiliformes | Mugilidae | Liza parmata | native | Broad-mouthed mullet | Big-eye mullet |
| Mugiliformes | Mugilidae | Liza subviridis | native | Greenback mullet | Belanak |
| Mugiliformes | Mugilidae | Liza tade | native | Tade mullet | Belanak sipit |
| Cypriniformes | Cyprinidae | Lobocheilos bo | native | ||
| Cypriniformes | Cyprinidae | Lobocheilos erinaceus | native | ||
| Cypriniformes | Cyprinidae | Lobocheilos falcifer | native | ||
| Cypriniformes | Cyprinidae | Lobocheilos hispidus | native | ||
| Cypriniformes | Cyprinidae | Lobocheilos ixocheilos | native | ||
| Cypriniformes | Cyprinidae | Lobocheilos kajanensis | native | Mujuk | |
| Cypriniformes | Cyprinidae | Lobocheilos lehat | native | Milang | |
| Cypriniformes | Cyprinidae | Lobocheilos schwanenfeldii | native | ||
| Cypriniformes | Cyprinidae | Lobocheilos tenura | native | ||
| Perciformes | Osphronemidae | Luciocephalus aura | native | ||
| Perciformes | Osphronemidae | Luciocephalus pulcher | native | Pikehead | Emplunyu |
| Cypriniformes | Cyprinidae | Luciosoma pellegrinii | native | ||
| Cypriniformes | Cyprinidae | Luciosoma setigerum | native | Wader | |
| Cypriniformes | Cyprinidae | Luciosoma spilopleura | native | Apollo sharkminnow | |
| Cypriniformes | Cyprinidae | Luciosoma trinema | native | Juajo | |
| Perciformes | Lutjanidae | Lutjanus argentimaculatus | native | Mangrove red snapper | Kakap merah |
| Perciformes | Lutjanidae | Lutjanus fuscescens | native | Freshwater snapper | Freshwater snapper |
| Perciformes | Lutjanidae | Lutjanus maxweberi | native | Pygmy snapper | Pygmy snapper |
| Clupeiformes | Engraulidae | Lycothrissa crocodilus | native | Sabretoothed thryssa | Kendari |
| Cypriniformes | Cyprinidae | Macrochirichthys macrochirus | native | Sward minnow | Timah-timah |
| Synbranchiformes | Mastacembelidae | Macrognathus aculeatus | native | Lesser spiny eel | Berod |
| Synbranchiformes | Mastacembelidae | Macrognathus circumcinctus | native | ||
| Synbranchiformes | Mastacembelidae | Macrognathus keithi | native | ||
| Synbranchiformes | Mastacembelidae | Macrognathus maculatus | native | Frecklefin eel | Tilan kapar |
| Synbranchiformes | Mastacembelidae | Macrognathus tapirus | native | Tilan kelokoi | |
| Synbranchiformes | Mastacembelidae | Macrognathus zebrinus | questionable | Zebra spiny eel | |
| Perciformes | Gobiidae | Mangarinus waterousi | native | ||
| Atheriniformes | Telmatherinidae | Marosatherina ladigesi | endemic | Celebes rainbowfish | |
| Synbranchiformes | Mastacembelidae | Mastacembelus armatus | native | Zig-zag eel | |
| Synbranchiformes | Mastacembelidae | Mastacembelus erythrotaenia | native | Fire eel | Tilan kelokoi |
| Synbranchiformes | Mastacembelidae | Mastacembelus notophthalmus | native | ||
| Synbranchiformes | Mastacembelidae | Mastacembelus unicolor | native | Tilan kelokoi | |
| Elopiformes | Megalopidae | Megalops cyprinoides | native | Indo-Pacific tarpon | Bulan-bulan |
| Perciformes | Blenniidae | Meiacanthus anema | native | Threadless blenny | |
| Atheriniformes | Melanotaeniidae | Melanotaenia affinis | native | New Guinea rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia ajamaruensis | endemic | Ajamaru lakes rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia angfa | endemic | Yakati rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia arfakensis | endemic | Arfak rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia batanta | native | Batanta rainbowfish | Batanta rainbowfish |
| Atheriniformes | Melanotaeniidae | Melanotaenia boesemani | endemic | Boeseman's rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia catherinae | endemic | Waigeo rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia corona | endemic | Corona rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia fredericki | endemic | Sorong rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia goldiei | native | Goldie River rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia irianjaya | endemic | Irian Jaya rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia japenensis | endemic | Yapen rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia kamaka | native | Kamaka rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia lakamora | native | Lakamora rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia maylandi | endemic | Mayland's rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia misoolensis | endemic | Misool rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia ogilbyi | endemic | Ogilby's rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia parva | endemic | Lake Kuromai rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia pierucciae | native | Pierucci's rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia praecox | endemic | Dwarf rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia rubripinnis | native | Red-finned rainbowfish | Red-finned rainbowfish |
| Atheriniformes | Melanotaeniidae | Melanotaenia splendida rubrostriata | native | Red-striped rainbowfish | |
| Atheriniformes | Melanotaeniidae | Melanotaenia synergos | native | ||
| Atheriniformes | Melanotaeniidae | Melanotaenia vanheurni | endemic | Van Heurn's rainbowfish | |
| Perciformes | Terapontidae | Mesopristes argenteus | native | Silver grunter | |
| Perciformes | Terapontidae | Mesopristes cancellatus | native | Tapiroid grunter | |
| Perciformes | Terapontidae | Mesopristes iravi | native | ||
| Siluriformes | Siluridae | Micronema hexapterus | native | Lais putih | |
| Syngnathiformes | Syngnathidae | Microphis argulus | native | Flat-nosed pipepish | |
| Syngnathiformes | Syngnathidae | Microphis brachyurus brachyurus | native | Short-tailed pipefish | Sili |
| Syngnathiformes | Syngnathidae | Microphis brevidorsalis | native | ||
| Syngnathiformes | Syngnathidae | Microphis caudocarinatus | endemic | Slender pipefish | |
| Syngnathiformes | Syngnathidae | Microphis leiaspis | native | Barhead pipefish | |
| Syngnathiformes | Syngnathidae | Microphis manadensis | native | Menado pipefish | |
| Syngnathiformes | Syngnathidae | Microphis mento | native | ||
| Syngnathiformes | Syngnathidae | Microphis ocellatus | native | ||
| Syngnathiformes | Syngnathidae | Microphis retzii | native | Ragged-tail pipefish | |
| Perciformes | Eleotridae | Mogurnda aiwasoensis | native | ||
| Perciformes | Eleotridae | Mogurnda aurifodinae | native | Northern mogurnda | |
| Perciformes | Eleotridae | Mogurnda cingulata | native | Banded mogurnda | |
| Perciformes | Eleotridae | Mogurnda kaifayama | native | ||
| Perciformes | Eleotridae | Mogurnda magna | native | ||
| Perciformes | Eleotridae | Mogurnda mbuta | native | ||
| Perciformes | Eleotridae | Mogurnda pardalis | native | ||
| Perciformes | Eleotridae | Mogurnda wapoga | native | ||
| Perciformes | Monodactylidae | Monodactylus argenteus | native | Silver moony | Gebal |
| Synbranchiformes | Synbranchidae | Monopterus albus | native | Swamp eel | Belut |
| Mugiliformes | Mugilidae | Mugil cephalus | native | Flathead mullet | Gerita |
| Perciformes | Gobiidae | Mugilogobius adeia | native | ||
| Perciformes | Gobiidae | Mugilogobius amadi | endemic | Poso bungu | |
| Perciformes | Gobiidae | Mugilogobius chulae | native | Yellowstripe goby | |
| Perciformes | Gobiidae | Mugilogobius duospilus | native | Dual-spotted goby | |
| Perciformes | Gobiidae | Mugilogobius karatunensis | native | ||
| Perciformes | Gobiidae | Mugilogobius latifrons | endemic | ||
| Perciformes | Gobiidae | Mugilogobius lepidotus | native | ||
| Perciformes | Gobiidae | Mugilogobius mertoni | native | Chequered mangrove goby | |
| Perciformes | Gobiidae | Mugilogobius platystomus | native | Indonesian goby | |
| Perciformes | Gobiidae | Mugilogobius rambaiae | native | Queen of Siam goby | |
| Perciformes | Gobiidae | Mugilogobius rexi | endemic | ||
| Perciformes | Gobiidae | Mugilogobius sarasinorum | endemic | Sarasin's goby | Bungu |
| Perciformes | Gobiidae | Mugilogobius zebra | native | ||
| Cypriniformes | Cyprinidae | Mystacoleucus marginatus | native | Genggehek | |
| Cypriniformes | Cyprinidae | Mystacoleucus padangensis | native | ||
| Siluriformes | Bagridae | Mystus abbreviatus | native | ||
| Siluriformes | Bagridae | Mystus alasensis | native | ||
| Siluriformes | Bagridae | Mystus bimaculatus | native | ||
| Siluriformes | Bagridae | Mystus bleekeri | native | Day's mystus | |
| Siluriformes | Bagridae | Mystus castaneus | native | Rik | |
| Siluriformes | Bagridae | Mystus cavasius | misidentification | Gangetic mystus | Ririgi |
| Siluriformes | Bagridae | Mystus gulio | native | Long whiskers catfish | Lundu |
| Siluriformes | Bagridae | Mystus impluviatus | native | ||
| Siluriformes | Bagridae | Mystus micracanthus | native | Twospot catfish | |
| Siluriformes | Bagridae | Mystus nigriceps | native | ||
| Siluriformes | Bagridae | Mystus punctifer | native | ||
| Siluriformes | Bagridae | Mystus singaringan | native | Landin | |
| Siluriformes | Bagridae | Mystus wolffii | native | ||
| Synbranchiformes | Chaudhuriidae | Nagaichthys filipes | native | ||
| Perciformes | Nandidae | Nandus nebulosus | native | Bornean leaffish | Emplekung |
| Siluriformes | Bagridae | Nanobagrus armatus | native | ||
| Siluriformes | Bagridae | Nanobagrus immaculatus | native | ||
| Siluriformes | Bagridae | Nanobagrus stellatus | native | ||
| Siluriformes | Bagridae | Nanobagrus torquatus | native | ||
| Siluriformes | Ariidae | Nedystoma dayi | native | Day's catfish | |
| Siluriformes | Ariidae | Nedystoma novaeguineae | native | Spoon-snouted catfish | |
| Cypriniformes | Balitoridae | Nemacheilus chrysolaimos | native | ||
| Cypriniformes | Balitoridae | Nemacheilus fasciatus | native | Barred loach | |
| Cypriniformes | Balitoridae | Nemacheilus kapuasensis | native | Ikan batu | |
| Cypriniformes | Balitoridae | Nemacheilus lactogeneus | native | Ikan batu | |
| Cypriniformes | Balitoridae | Nemacheilus longipectoralis | native | ||
| Cypriniformes | Balitoridae | Nemacheilus longipinnis | native | ||
| Cypriniformes | Balitoridae | Nemacheilus olivaceus | native | ||
| Cypriniformes | Balitoridae | Nemacheilus pfeifferae | native | Ikan pasir | |
| Cypriniformes | Balitoridae | Nemacheilus saravacensis | native | Ikan batu | |
| Cypriniformes | Balitoridae | Nemacheilus selangoricus | native | ||
| Cypriniformes | Balitoridae | Nemacheilus spiniferus | native | Ikan batu | |
| Cypriniformes | Balitoridae | Nemacheilus tuberigum | native | ||
| Cypriniformes | Cyprinidae | Nematabramis alestes | native | ||
| Cypriniformes | Cyprinidae | Nematabramis borneensis | native | ||
| Cypriniformes | Cyprinidae | Nematabramis everetti | native | ||
| Cypriniformes | Cyprinidae | Nematabramis steindachneri | native | ||
| Clupeiformes | Clupeidae | Nematalosa erebi | native | Australian river gizzard shad | |
| Siluriformes | Ariidae | Neoarius graeffei | native | Lesser salmon catfish | |
| Siluriformes | Ariidae | Neoarius latirostris | native | Broad-snouted catfish | |
| Siluriformes | Ariidae | Neoarius leptaspis | native | Salmon catfish | |
| Siluriformes | Ariidae | Neoarius utarus | native | Northern rivers catfish | |
| Siluriformes | Ariidae | Neoarius velutinus | native | Papillate catfish | Kancur |
| Cypriniformes | Cyprinidae | Neobarynotus microlepis | native | Jelawat batu | |
| Cypriniformes | Balitoridae | Neogastromyzon crassiobex | native | ||
| Cypriniformes | Balitoridae | Neogastromyzon kottelati | native | ||
| Cypriniformes | Balitoridae | Neogastromyzon nieuwenhuisii | native | Dekat | |
| Cypriniformes | Balitoridae | Neogastromyzon pauciradiatus | native | ||
| Cypriniformes | Balitoridae | Neohomaloptera johorensis | native | ||
| Cypriniformes | Cyprinidae | Neolissochilus hexagonolepis | native | Copper mahseer | |
| Cypriniformes | Cyprinidae | Neolissochilus longipinnis | native | ||
| Cypriniformes | Cyprinidae | Neolissochilus sumatranus | native | ||
| Cypriniformes | Cyprinidae | Neolissochilus thienemanni | native | Ihan | |
| Siluriformes | Plotosidae | Neosilurus ater | native | Narrowfront tandan | |
| Siluriformes | Plotosidae | Neosilurus brevidorsalis | native | Shortfin tandan | |
| Siluriformes | Plotosidae | Neosilurus equinus | native | Southern tandan | |
| Siluriformes | Plotosidae | Neosilurus idenburgi | native | Idenburg tandan | |
| Siluriformes | Plotosidae | Neosilurus novaeguineae | native | New Guinea tandan | |
| Atheriniformes | Phallostethidae | Neostethus bicornis | native | ||
| Atheriniformes | Phallostethidae | Neostethus borneensis | native | ||
| Atheriniformes | Phallostethidae | Neostethus lankesteri | native | ||
| Scorpaeniformes | Tetrarogidae | Neovespicula depressifrons | native | Leaf goblinfish | |
| Perciformes | Sciaenidae | Nibea soldado | native | Soldier croaker | Otot |
| Perciformes | Sciaenidae | Nibea squamosa | native | Scale croaker | |
| Beloniformes | Hemiramphidae | Nomorhamphus brembachi | native | ||
| Beloniformes | Hemiramphidae | Nomorhamphus celebensis | endemic | Poso halfbeak | |
| Beloniformes | Hemiramphidae | Nomorhamphus ebrardtii | native | ||
| Beloniformes | Hemiramphidae | Nomorhamphus hageni | native | ||
| Beloniformes | Hemiramphidae | Nomorhamphus kolonodalensis | native | Ikan sumpet | |
| Beloniformes | Hemiramphidae | Nomorhamphus liemi | native | ||
| Beloniformes | Hemiramphidae | Nomorhamphus megarrhamphus | endemic | ||
| Beloniformes | Hemiramphidae | Nomorhamphus ravnaki | native | ||
| Beloniformes | Hemiramphidae | Nomorhamphus sanussii | native | ||
| Beloniformes | Hemiramphidae | Nomorhamphus towoetii | native | ||
| Beloniformes | Hemiramphidae | Nomorhamphus weberi | endemic | ||
| Osteoglossiformes | Notopteridae | Notopterus notopterus | native | Bronze featherback | Kapirat |
| Perciformes | Eleotridae | Odonteleotris macrodon | native | Gangetic sleeper | |
| Siluriformes | Plotosidae | Oloplotosus mariae | native | Maria's tandan | |
| Perciformes | Blenniidae | Omobranchus ferox | native | Gossamer blenny | |
| Siluriformes | Siluridae | Ompok bimaculatus | native | Butter catfish | Lempuk |
| Siluriformes | Siluridae | Ompok binotatus | native | Anak lais | |
| Siluriformes | Siluridae | Ompok borneensis | native | ||
| Siluriformes | Siluridae | Ompok eugeneiatus | native | Malay glass catfish | Lais nipah |
| Siluriformes | Siluridae | Ompok hypophthalmus | native | ||
| Siluriformes | Siluridae | Ompok javanensis | native | ||
| Siluriformes | Siluridae | Ompok leiacanthus | native | Daun bambu | |
| Siluriformes | Siluridae | Ompok miostoma | native | Wagal | |
| Siluriformes | Siluridae | Ompok pluriradiatus | native | ||
| Siluriformes | Siluridae | Ompok rhadinurus | native | Lais butu | |
| Siluriformes | Siluridae | Ompok weberi | native | ||
| Salmoniformes | Salmonidae | Oncorhynchus mykiss | not established | Rainbow trout | |
| Perciformes | Eleotridae | Ophieleotris aporos | native | Snakehead gudgeon | |
| Perciformes | Eleotridae | Ophiocara porocephala | native | Northern mud gudgeon | Payangka |
| Synbranchiformes | Synbranchidae | Ophisternon bengalense | native | Bengal eel | Belut |
| Perciformes | Cichlidae | Oreochromis mossambicus | introduced | Mozambique tilapia | Jahir |
| Perciformes | Cichlidae | Oreochromis niloticus niloticus | introduced | Nile tilapia | Nila |
| Beloniformes | Adrianichthyidae | Oryzias celebensis | endemic | Celebes medaka | |
| Beloniformes | Adrianichthyidae | Oryzias hubbsi | native | ||
| Beloniformes | Adrianichthyidae | Oryzias javanicus | native | Javanese ricefish | Lunjar |
| Beloniformes | Adrianichthyidae | Oryzias marmoratus | endemic | Marmorated medaka | |
| Beloniformes | Adrianichthyidae | Oryzias matanensis | endemic | Matano medaka | |
| Beloniformes | Adrianichthyidae | Oryzias nebulosus | native | Nebulosus ricefish | |
| Beloniformes | Adrianichthyidae | Oryzias nigrimas | endemic | Black buntingi | |
| Beloniformes | Adrianichthyidae | Oryzias orthognathus | endemic | Sharpjawed buntingi | |
| Beloniformes | Adrianichthyidae | Oryzias profundicola | endemic | Yellow finned medaka | |
| Perciformes | Osphronemidae | Osphronemus goramy | native | Giant gourami | Gurami |
| Perciformes | Osphronemidae | Osphronemus laticlavius | native | Giant red tail gourami | |
| Perciformes | Osphronemidae | Osphronemus septemfasciatus | native | ||
| Cypriniformes | Cyprinidae | Osteochilus bellus | native | ||
| Cypriniformes | Cyprinidae | Osteochilus borneensis | native | ||
| Cypriniformes | Cyprinidae | Osteochilus enneaporus | native | ||
| Cypriniformes | Cyprinidae | Osteochilus harrisoni | native | ||
| Cypriniformes | Cyprinidae | Osteochilus hasseltii | native | Silver sharkminnow | Asah-asah |
| Cypriniformes | Cyprinidae | Osteochilus intermedius | native | Menyadin | |
| Cypriniformes | Cyprinidae | Osteochilus jeruk | native | ||
| Cypriniformes | Cyprinidae | Osteochilus kahajanensis | native | Palau | |
| Cypriniformes | Cyprinidae | Osteochilus kappenii | endemic | Kelajang | |
| Cypriniformes | Cyprinidae | Osteochilus kelabau | native | Kelabau | |
| Cypriniformes | Cyprinidae | Osteochilus kuekenthali | native | ||
| Cypriniformes | Cyprinidae | Osteochilus melanopleurus | native | Kelabau padi | |
| Cypriniformes | Cyprinidae | Osteochilus microcephalus | native | Bantak | |
| Cypriniformes | Cyprinidae | Osteochilus partilineatus | native | Engkarit | |
| Cypriniformes | Cyprinidae | Osteochilus pentalineatus | native | ||
| Cypriniformes | Cyprinidae | Osteochilus repang | native | Repang | |
| Cypriniformes | Cyprinidae | Osteochilus schlegelii | native | Giant sharkminnow | Kenali |
| Cypriniformes | Cyprinidae | Osteochilus serokan | native | ||
| Cypriniformes | Cyprinidae | Osteochilus spilurus | native | Bantak batu | |
| Cypriniformes | Cyprinidae | Osteochilus triporos | native | Menyadin | |
| Cypriniformes | Cyprinidae | Osteochilus vittatus | native | Bonylip barb | Kajong |
| Cypriniformes | Cyprinidae | Osteochilus waandersii | native | Bantak batu | |
| Perciformes | Eleotridae | Oxyeleotris altipinna | native | ||
| Perciformes | Eleotridae | Oxyeleotris aruensis | native | Aru gudgeon | |
| Perciformes | Eleotridae | Oxyeleotris fimbriata | native | Fimbriate gudgeon | |
| Perciformes | Eleotridae | Oxyeleotris herwerdenii | native | Blackbanded gauvina | |
| Perciformes | Eleotridae | Oxyeleotris heterodon | native | Sentani gudgeon | |
| Perciformes | Eleotridae | Oxyeleotris marmorata | native | Marble goby | Ikan betutu |
| Perciformes | Eleotridae | Oxyeleotris paucipora | native | Fewpored gudgeon | |
| Perciformes | Eleotridae | Oxyeleotris urophthalmoides | native | ||
| Perciformes | Eleotridae | Oxyeleotris urophthalmus | native | Belunguran hitam | |
| Perciformes | Eleotridae | Oxyeleotris wisselensis | endemic | Paniai gudgeon | |
| Cypriniformes | Cyprinidae | Oxygaster anomalura | native | Seluang | |
| Cypriniformes | Cyprinidae | Paedocypris carbunculus | native | ||
| Cypriniformes | Cyprinidae | Paedocypris progenetica | native | ||
| Perciformes | Gobiidae | Pandaka rouxi | native | ||
| Perciformes | Gobiidae | Pandaka trimaculata | native | ||
| Siluriformes | Pangasiidae | Pangasius bedado | native | ||
| Siluriformes | Pangasiidae | Pangasius djambal | native | ||
| Siluriformes | Pangasiidae | Pangasius humeralis | native | ||
| Siluriformes | Pangasiidae | Pangasius kinabatanganensis | native | ||
| Siluriformes | Pangasiidae | Pangasius kunyit | native | Kunyit | |
| Siluriformes | Pangasiidae | Pangasius lithostoma | native | Lais benguk | |
| Siluriformes | Pangasiidae | Pangasius macronema | native | Riu | |
| Siluriformes | Pangasiidae | Pangasius mahakamensis | endemic | ||
| Siluriformes | Pangasiidae | Pangasius nasutus | native | Patin | |
| Siluriformes | Pangasiidae | Pangasius nieuwenhuisii | native | ||
| Siluriformes | Pangasiidae | Pangasius pangasius | questionable | Yellowtail catfish | Jambal |
| Siluriformes | Pangasiidae | Pangasius polyuranodon | native | Sadarin | |
| Siluriformes | Pangasiidae | Pangasius rheophilus | native | ||
| Cypriniformes | Cobitidae | Pangio agma | native | ||
| Cypriniformes | Cobitidae | Pangio alternans | native | ||
| Cypriniformes | Cobitidae | Pangio anguillaris | native | Ikan cacing | |
| Cypriniformes | Cobitidae | Pangio borneensis | native | ||
| Cypriniformes | Cobitidae | Pangio cuneovirgata | native | ||
| Cypriniformes | Cobitidae | Pangio doriae | native | Ikan cacing | |
| Cypriniformes | Cobitidae | Pangio kuhlii | native | Coolie loach | |
| Cypriniformes | Cobitidae | Pangio malayana | native | Ikan cacing | |
| Cypriniformes | Cobitidae | Pangio mariarum | native | ||
| Cypriniformes | Cobitidae | Pangio oblonga | native | Java loach | Ikan cacing |
| Cypriniformes | Cobitidae | Pangio piperata | native | ||
| Cypriniformes | Cobitidae | Pangio pulla | native | ||
| Cypriniformes | Cobitidae | Pangio robiginosa | native | ||
| Cypriniformes | Cobitidae | Pangio semicincta | native | Ikan cacing | |
| Cypriniformes | Cobitidae | Pangio shelfordii | native | Borneo loach | Ikan cacing |
| Cypriniformes | Cobitidae | Pangio superba | native | Ikan cacing | |
| Cypriniformes | Cyprinidae | Parachela cyanea | native | Lipi | |
| Cypriniformes | Cyprinidae | Parachela hypophthalmus | native | ||
| Cypriniformes | Cyprinidae | Parachela ingerkongi | native | ||
| Cypriniformes | Cyprinidae | Parachela maculicauda | native | ||
| Cypriniformes | Cyprinidae | Parachela oxygastroides | native | Glass fish | Entebuloh |
| Cypriniformes | Cyprinidae | Parachela siamensis | native | ||
| Cypriniformes | Cyprinidae | Paracrossochilus acerus | native | ||
| Cypriniformes | Cyprinidae | Paracrossochilus vittatus | native | Enseluai batu | |
| Perciformes | Ambassidae | Paradoxodacna piratica | native | Senara | |
| Siluriformes | Akysidae | Parakysis anomalopteryx | native | ||
| Siluriformes | Akysidae | Parakysis grandis | native | ||
| Siluriformes | Akysidae | Parakysis longirostris | native | ||
| Siluriformes | Akysidae | Parakysis notialis | native | ||
| Siluriformes | Akysidae | Parakysis verrucosus | native | ||
| Perciformes | Ambassidae | Parambassis altipinnis | endemic | High-finned glass perchlet | |
| Perciformes | Ambassidae | Parambassis apogonoides | native | Iridescent glassy perchlet | Gaba-gaba |
| Perciformes | Ambassidae | Parambassis confinis | native | Sepik glass perchlet | |
| Perciformes | Ambassidae | Parambassis gulliveri | native | Giant glassfish | |
| Perciformes | Ambassidae | Parambassis macrolepis | native | Bengak kenari | |
| Perciformes | Ambassidae | Parambassis siamensis | native | ||
| Perciformes | Ambassidae | Parambassis wolffii | native | Duskyfin glassy perchlet | Senara |
| Perciformes | Polynemidae | Parapolynemus verekeri | native | Dwarf paradise fish | |
| Atheriniformes | Telmatherinidae | Paratherina cyanea | endemic | ||
| Atheriniformes | Telmatherinidae | Paratherina labiosa | endemic | ||
| Atheriniformes | Telmatherinidae | Paratherina striata | endemic | ||
| Atheriniformes | Telmatherinidae | Paratherina wolterecki | endemic | ||
| Perciformes | Gobiidae | Parawaous megacephalus | native | ||
| Pleuronectiformes | Soleidae | Pardachirus poropterus | native | Estuary sole | |
| Cypriniformes | Balitoridae | Parhomaloptera microstoma | native | ||
| Perciformes | Osphronemidae | Parosphromenus allani | native | ||
| Perciformes | Osphronemidae | Parosphromenus anjunganensis | native | ||
| Perciformes | Osphronemidae | Parosphromenus bintan | native | ||
| Perciformes | Osphronemidae | Parosphromenus deissneri | endemic | Licorice gourami | |
| Perciformes | Osphronemidae | Parosphromenus filamentosus | native | Spiketail gourami | |
| Perciformes | Osphronemidae | Parosphromenus linkei | native | ||
| Perciformes | Osphronemidae | Parosphromenus opallios | native | ||
| Perciformes | Osphronemidae | Parosphromenus ornaticauda | native | ||
| Perciformes | Osphronemidae | Parosphromenus pahuensis | native | ||
| Perciformes | Osphronemidae | Parosphromenus parvulus | native | ||
| Perciformes | Osphronemidae | Parosphromenus quindecim | native | ||
| Perciformes | Osphronemidae | Parosphromenus sumatranus | native | ||
| Rajiformes | Dasyatidae | Pastinachus sephen | native | Cowtail stingray | Pari ayam |
| Cypriniformes | Cyprinidae | Pectenocypris balaena | native | Seluang malam | |
| Cypriniformes | Cyprinidae | Pectenocypris korthausae | native | ||
| Atheriniformes | Melanotaeniidae | Pelangia mbutaensis | native | ||
| Clupeiformes | Pristigasteridae | Pellona ditchela | native | Indian pellona | Dero |
| Perciformes | Gobiidae | Periophthalmodon septemradiatus | native | ||
| Perciformes | Gobiidae | Periophthalmus novaeguineaensis | native | New Guinea mudskipper | |
| Siluriformes | Siluridae | Phalacronotus apogon | native | Lai' jungang | |
| Siluriformes | Siluridae | Phalacronotus micronemus | native | Lais jungang | |
| Siluriformes | Siluridae | Phalacronotus parvanalis | native | ||
| Atheriniformes | Phallostethidae | Phenacostethus posthon | native | ||
| Atheriniformes | Phallostethidae | Phenacostethus smithi | native | Smith's priapium fish | |
| Perciformes | Terapontidae | Pingalla lorentzi | native | Lorentz's grunter | |
| Anguilliformes | Ophichthidae | Pisodonophis boro | native | Rice-paddy eel | Tonang |
| Anguilliformes | Ophichthidae | Pisodonophis cancrivorus | native | Longfin snake-eel | Estuary snake eel |
| Anguilliformes | Ophichthidae | Pisodonophis hypselopterus | native | Telan | |
| Perciformes | Haemulidae | Plectorhinchus gibbosus | native | Harry hotlips | Brown sweetlips |
| Siluriformes | Ariidae | Plicofollis dussumieri | native | Blacktip sea catfish | Gaguk hitam |
| Siluriformes | Plotosidae | Plotosus canius | native | Gray eel-catfish | Sembilang |
| Siluriformes | Plotosidae | Plotosus papuensis | native | Papuan eel-catfish | |
| Cyprinodontiformes | Poeciliidae | Poecilia latipinna | introduced | Sailfin molly | |
| Cyprinodontiformes | Poeciliidae | Poecilia reticulata | introduced | Guppy | Ikan seribu |
| Cyprinodontiformes | Poeciliidae | Poecilia sphenops | introduced | Molly | |
| Perciformes | Polynemidae | Polydactylus macrochir | native | King threadfin | |
| Perciformes | Polynemidae | Polydactylus macrophthalmus | native | River threadfin | |
| Perciformes | Polynemidae | Polynemus dubius | native | Eastern paradise fish | Jangut |
| Perciformes | Polynemidae | Polynemus kapuasensis | native | Kapuas elegant paradise fish | Kurau |
| Perciformes | Polynemidae | Polynemus melanochir melanochir | native | Blackhand paradise fish | Kurau |
| Perciformes | Polynemidae | Polynemus multifilis | native | Elegant paradiseus fish | Kurau jangut |
| Siluriformes | Plotosidae | Porochilus meraukensis | native | Merauke tandan | |
| Siluriformes | Plotosidae | Porochilus obbesi | native | Obbes' catfish | |
| Cypriniformes | Cyprinidae | Poropuntius birtwistlei | native | ||
| Cypriniformes | Cyprinidae | Poropuntius huguenini | native | ||
| Cypriniformes | Cyprinidae | Poropuntius tawarensis | endemic | Keperas | |
| Perciformes | Eleotridae | Prionobutis dasyrhynchus | native | ||
| Pristiformes | Pristidae | Pristis microdon | native | Largetooth sawfish | Cucut gergaji |
| Pristiformes | Pristidae | Pristis pectinata | native | Smalltooth sawfish | |
| Pristiformes | Pristidae | Pristis zijsron | native | Longcomb sawfish | |
| Perciformes | Nandidae | Pristolepis fasciata | native | Catopra | Empatung |
| Perciformes | Nandidae | Pristolepis grootii | native | Indonesian leaffish | |
| Cypriniformes | Balitoridae | Protomyzon aphelocheilus | native | ||
| Cypriniformes | Balitoridae | Protomyzon borneensis | native | ||
| Cypriniformes | Balitoridae | Protomyzon griswoldi | native | ||
| Cypriniformes | Balitoridae | Protomyzon whiteheadi | native | ||
| Perciformes | Gobiidae | Pseudapocryptes borneensis | native | ||
| Perciformes | Gobiidae | Pseudapocryptes elongatus | native | Ikan njanjan | |
| Siluriformes | Schilbeidae | Pseudeutropius brachypopterus | native | Nuayang tebal | |
| Siluriformes | Schilbeidae | Pseudeutropius moolenburghae | native | Nuayang tipis | |
| Siluriformes | Akysidae | Pseudobagarius baramensis | native | ||
| Siluriformes | Akysidae | Pseudobagarius fuscus | native | ||
| Siluriformes | Akysidae | Pseudobagarius macronemus | native | ||
| Siluriformes | Akysidae | Pseudobagarius meridionalis | endemic | ||
| Siluriformes | Akysidae | Pseudobagarius pseudobagarius | native | ||
| Perciformes | Gobiidae | Pseudogobius avicennia | native | ||
| Perciformes | Gobiidae | Pseudogobius javanicus | native | ||
| Perciformes | Gobiidae | Pseudogobius poicilosoma | native | ||
| Cypriniformes | Balitoridae | Pseudohomaloptera tatereganii | native | ||
| Siluriformes | Pangasiidae | Pseudolais micronemus | native | Shortbarbel pangasius | |
| Atheriniformes | Pseudomugilidae | Pseudomugil gertrudae | native | Spotted blue-eye | |
| Atheriniformes | Pseudomugilidae | Pseudomugil ivantsoffi | native | ||
| Atheriniformes | Pseudomugilidae | Pseudomugil novaeguineae | native | New Guinea blue-eye | |
| Atheriniformes | Pseudomugilidae | Pseudomugil pellucidus | native | ||
| Atheriniformes | Pseudomugilidae | Pseudomugil reticulatus | endemic | Vogelkop blue-eye | |
| Siluriformes | Bagridae | Pseudomystus breviceps | native | ||
| Siluriformes | Bagridae | Pseudomystus carnosus | native | ||
| Siluriformes | Bagridae | Pseudomystus flavipinnis | native | ||
| Siluriformes | Bagridae | Pseudomystus fuscus | native | Baung lebang | |
| Siluriformes | Bagridae | Pseudomystus heokhuii | native | ||
| Siluriformes | Bagridae | Pseudomystus inornatus | native | ||
| Siluriformes | Bagridae | Pseudomystus leiacanthus | native | ||
| Siluriformes | Bagridae | Pseudomystus mahakamensis | native | ||
| Siluriformes | Bagridae | Pseudomystus moeschii | endemic | ||
| Siluriformes | Bagridae | Pseudomystus myersi | native | Ikan pisang | |
| Siluriformes | Bagridae | Pseudomystus robustus | native | ||
| Siluriformes | Bagridae | Pseudomystus rugosus | native | ||
| Siluriformes | Bagridae | Pseudomystus stenogrammus | native | ||
| Siluriformes | Bagridae | Pseudomystus stenomus | native | Baung burai | |
| Siluriformes | Bagridae | Pseudomystus vaillanti | native | ||
| Perciformes | Gobiidae | Pseudotrypauchen multiradiatus | native | ||
| Siluriformes | Loricariidae | Pterygoplichthys disjunctivus | introduced | Vermiculated sailfin catfish | |
| Siluriformes | Loricariidae | Pterygoplichthys pardalis | introduced | Amazon sailfin catfish | |
| Cypriniformes | Cyprinidae | Puntioplites bulu | native | Bulu-bulu | |
| Cypriniformes | Cyprinidae | Puntioplites waandersi | native | Kepiat | |
| Cypriniformes | Cyprinidae | Puntius anchisporus | native | Berbaju | |
| Cypriniformes | Cyprinidae | Puntius aphya | native | ||
| Cypriniformes | Cyprinidae | Puntius banksi | native | Bangas | |
| Cypriniformes | Cyprinidae | Puntius binotatus | native | Spotted barb | Bunter |
| Cypriniformes | Cyprinidae | Puntius bramoides | native | ||
| Cypriniformes | Cyprinidae | Puntius brevis | native | Cakul | |
| Cypriniformes | Cyprinidae | Puntius bunau | native | ||
| Cypriniformes | Cyprinidae | Puntius dorsimaculatus | native | Blackline barb | |
| Cypriniformes | Cyprinidae | Puntius endecanalis | native | Berbaju | |
| Cypriniformes | Cyprinidae | Puntius everetti | native | Clown barb | Berbaju |
| Cypriniformes | Cyprinidae | Puntius foerschi | native | ||
| Cypriniformes | Cyprinidae | Puntius gemellus | native | ||
| Cypriniformes | Cyprinidae | Puntius hexazona | native | ||
| Cypriniformes | Cyprinidae | Puntius johorensis | native | Striped barb | Seluang |
| Cypriniformes | Cyprinidae | Puntius kuchingensis | native | Bangas | |
| Cypriniformes | Cyprinidae | Puntius lateristriga | native | Spanner barb | Dokun |
| Cypriniformes | Cyprinidae | Puntius lineatus | native | Lined barb | Engkarit |
| Cypriniformes | Cyprinidae | Puntius microps | endemic | ||
| Cypriniformes | Cyprinidae | Puntius oligolepis | native | Checkered barb | Pantau bungo |
| Cypriniformes | Cyprinidae | Puntius orphoides | native | Javaen barb | Mata merah |
| Cypriniformes | Cyprinidae | Puntius pentazona | native | Fiveband barb | |
| Cypriniformes | Cyprinidae | Puntius rhomboocellatus | native | Berbaju | |
| Cypriniformes | Cyprinidae | Puntius sealei | native | ||
| Cypriniformes | Cyprinidae | Puntius tetrazona | native | Sumatra barb | Ikan baja |
| Cypriniformes | Cyprinidae | Puntius trifasciatus | native | Engkarit | |
| Cypriniformes | Cyprinidae | Rasbora agilis | native | ||
| Cypriniformes | Cyprinidae | Rasbora aprotaenia | native | ||
| Cypriniformes | Cyprinidae | Rasbora argyrotaenia | native | Silver rasbora | Waderpari |
| Cypriniformes | Cyprinidae | Rasbora baliensis | endemic | ||
| Cypriniformes | Cyprinidae | Rasbora bankanensis | native | Seluang | |
| Cypriniformes | Cyprinidae | Rasbora beauforti | native | Spotlight rasbora | |
| Cypriniformes | Cyprinidae | Rasbora borapetensis | native | Blackline rasbora | |
| Cypriniformes | Cyprinidae | Rasbora borneensis | native | Seluang buluh | |
| Cypriniformes | Cyprinidae | Rasbora brittani | native | ||
| Cypriniformes | Cyprinidae | Rasbora bunguranensis | native | ||
| Cypriniformes | Cyprinidae | Rasbora caudimaculata | native | Greater scissortail | Enseluai |
| Cypriniformes | Cyprinidae | Rasbora cephalotaenia | native | Enseluai | |
| Cypriniformes | Cyprinidae | Rasbora chrysotaenia | native | Goldstripe rasbora | |
| Cypriniformes | Cyprinidae | Rasbora daniconius | native | Slender rasbora | |
| Cypriniformes | Cyprinidae | Rasbora dies | native | ||
| Cypriniformes | Cyprinidae | Rasbora dorsiocellata | native | Eyespot rasbora | Engkruyuk |
| Cypriniformes | Cyprinidae | Rasbora dusonensis | native | Rosefin rasbora | Enseluai |
| Cypriniformes | Cyprinidae | Rasbora einthovenii | native | Brilliant rasbora | Sulir batang |
| Cypriniformes | Cyprinidae | Rasbora elegans | native | Twospot rasbora | |
| Cypriniformes | Cyprinidae | Rasbora ennealepis | native | ||
| Cypriniformes | Cyprinidae | Rasbora gracilis | native | Seluang badar | |
| Cypriniformes | Cyprinidae | Rasbora hosii | native | ||
| Cypriniformes | Cyprinidae | Rasbora hubbsi | native | ||
| Cypriniformes | Cyprinidae | Rasbora jacobsoni | native | Mangihuton | |
| Cypriniformes | Cyprinidae | Rasbora johannae | native | ||
| Cypriniformes | Cyprinidae | Rasbora kalbarensis | native | Kalbar rasbora | Seluang |
| Cypriniformes | Cyprinidae | Rasbora kalochroma | native | Clown rasbora | |
| Cypriniformes | Cyprinidae | Rasbora lateristriata | native | Yellow rasbora | Cecereh |
| Cypriniformes | Cyprinidae | Rasbora laticlavia | native | ||
| Cypriniformes | Cyprinidae | Rasbora leptosoma | native | Copperstripe rasbora | |
| Cypriniformes | Cyprinidae | Rasbora meinkeni | native | Domba | |
| Cypriniformes | Cyprinidae | Rasbora myersi | native | ||
| Cypriniformes | Cyprinidae | Rasbora pauciperforata | native | Redstripe rasbora | Rita' |
| Cypriniformes | Cyprinidae | Rasbora reticulata | native | ||
| Cypriniformes | Cyprinidae | Rasbora rutteni | native | ||
| Cypriniformes | Cyprinidae | Rasbora sarawakensis | native | Seluang | |
| Cypriniformes | Cyprinidae | Rasbora semilineata | native | ||
| Cypriniformes | Cyprinidae | Rasbora spilotaenia | native | ||
| Cypriniformes | Cyprinidae | Rasbora subtilis | endemic | Seluang | |
| Cypriniformes | Cyprinidae | Rasbora sumatrana | native | ||
| Cypriniformes | Cyprinidae | Rasbora tawarensis | native | ||
| Cypriniformes | Cyprinidae | Rasbora tobana | native | ||
| Cypriniformes | Cyprinidae | Rasbora tornieri | native | Yellowtail rasbora | |
| Cypriniformes | Cyprinidae | Rasbora trifasciata | native | ||
| Cypriniformes | Cyprinidae | Rasbora trilineata | native | Three-lined rasbora | Pantau bana |
| Cypriniformes | Cyprinidae | Rasbora tubbi | native | ||
| Cypriniformes | Cyprinidae | Rasbora tuberculata | native | ||
| Cypriniformes | Cyprinidae | Rasbora volzii | native | ||
| Cypriniformes | Cyprinidae | Rasbora vulcanus | native | ||
| Cypriniformes | Cyprinidae | Rasborichthys helfrichii | native | Enseluai bulu | |
| Perciformes | Gobiidae | Redigobius amblyrhynchus | native | ||
| Perciformes | Gobiidae | Redigobius balteatus | native | Rhinohorn goby | Rhino-horn goby |
| Perciformes | Gobiidae | Redigobius bikolanus | native | Speckled goby | |
| Perciformes | Gobiidae | Redigobius chrysosoma | native | ||
| Perciformes | Gobiidae | Redigobius dispar | native | ||
| Perciformes | Gobiidae | Redigobius leptochilus | native | ||
| Perciformes | Gobiidae | Redigobius penango | native | ||
| Perciformes | Gobiidae | Redigobius roemeri | native | Roemer's goby | |
| Perciformes | Gobiidae | Redigobius tambujon | native | ||
| Mugiliformes | Mugilidae | Rhinomugil nasutus | native | Shark mullet | |
| Perciformes | Rhyacichthyidae | Rhyacichthys aspro | native | Loach goby | |
| Cypriniformes | Cyprinidae | Rohteichthys microlepis | native | Lumbut | |
| Salmoniformes | Salmonidae | Salmo salar | not established | Atlantic salmon | |
| Perciformes | Scatophagidae | Scatophagus argus | native | Spotted scat | Bidang |
| Perciformes | Gobiidae | Schismatogobius bruynisi | native | ||
| Perciformes | Gobiidae | Schismatogobius marmoratus | native | ||
| Cypriniformes | Cyprinidae | Schismatorhynchos endecarhapis | native | ||
| Cypriniformes | Cyprinidae | Schismatorhynchos heterorhynchos | native | ||
| Cypriniformes | Balitoridae | Schistura maculiceps | native | ||
| Osteoglossiformes | Osteoglossidae | Scleropages aureus | native | Red tail golden | |
| Osteoglossiformes | Osteoglossidae | Scleropages formosus | native | Asian bonytongue | Ikan siluk |
| Osteoglossiformes | Osteoglossidae | Scleropages jardinii | native | Australian bonytongue | |
| Osteoglossiformes | Osteoglossidae | Scleropages legendrei | native | Super red arowana | |
| Osteoglossiformes | Osteoglossidae | Scleropages macrocephalus | native | ||
| Perciformes | Leiognathidae | Secutor ruconius | native | Deep pugnose ponyfish | Loba |
| Clupeiformes | Engraulidae | Setipinna melanochir | native | Dusky-hairfin anchovy | Kempit |
| Perciformes | Gobiidae | Sicyopterus brevis | native | ||
| Perciformes | Gobiidae | Sicyopterus cynocephalus | native | Cleft-lipped goby | |
| Perciformes | Gobiidae | Sicyopterus hageni | endemic | Hagen's goby | |
| Perciformes | Gobiidae | Sicyopterus longifilis | native | Threadfin goby | |
| Perciformes | Gobiidae | Sicyopterus macrostetholepis | native | ||
| Perciformes | Gobiidae | Sicyopterus microcephalus | native | ||
| Perciformes | Gobiidae | Sicyopterus micrurus | native | Clinging goby | |
| Perciformes | Gobiidae | Sicyopterus ouwensi | native | Ouwen's goby | |
| Perciformes | Gobiidae | Sicyopterus parvei | native | ||
| Perciformes | Gobiidae | Sicyopterus wichmanni | native | ||
| Perciformes | Gobiidae | Sicyopus balinense | native | Bali goby | |
| Perciformes | Gobiidae | Sicyopus exallisquamulus | native | ||
| Perciformes | Gobiidae | Sicyopus multisquamatus | native | ||
| Perciformes | Gobiidae | Sicyopus mystax | native | ||
| Perciformes | Gobiidae | Sicyopus zosterophorum | native | ||
| Perciformes | Sillaginidae | Sillago macrolepis | native | Large-scale sillago | Besot |
| Perciformes | Sillaginidae | Sillago sihama | native | Silver sillago | Besot |
| Siluriformes | Siluridae | Silurichthys citatus | endemic | ||
| Siluriformes | Siluridae | Silurichthys gibbiceps | native | ||
| Siluriformes | Siluridae | Silurichthys hasseltii | native | ||
| Siluriformes | Siluridae | Silurichthys indragiriensis | native | ||
| Siluriformes | Siluridae | Silurichthys marmoratus | native | Anak lais | |
| Siluriformes | Siluridae | Silurichthys phaiosoma | native | Anak lais | |
| Siluriformes | Siluridae | Silurichthys sanguineus | native | ||
| Siluriformes | Siluridae | Silurichthys schneideri | native | ||
| Perciformes | Osphronemidae | Sphaerichthys acrostoma | native | ||
| Perciformes | Osphronemidae | Sphaerichthys osphromenoides | native | Chocolate gourami | |
| Perciformes | Osphronemidae | Sphaerichthys selatanensis | native | ||
| Perciformes | Osphronemidae | Sphaerichthys vaillanti | native | Sepat | |
| Perciformes | Gobiidae | Stenogobius beauforti | native | Beaufort's goby | |
| Perciformes | Gobiidae | Stenogobius blokzeyli | native | ||
| Perciformes | Gobiidae | Stenogobius ingeri | native | ||
| Perciformes | Gobiidae | Stenogobius lachneri | endemic | Bintuni goby | |
| Perciformes | Gobiidae | Stenogobius laterisquamatus | native | ||
| Perciformes | Gobiidae | Stenogobius ophthalmoporus | native | Belunguran | |
| Perciformes | Gobiidae | Stenogobius zurstrassenii | native | ||
| Perciformes | Gobiidae | Stigmatogobius borneensis | native | ||
| Perciformes | Gobiidae | Stigmatogobius pleurostigma | native | ||
| Perciformes | Gobiidae | Stigmatogobius sadanundio | native | ||
| Perciformes | Gobiidae | Stigmatogobius sella | native | ||
| Perciformes | Gobiidae | Stigmatogobius signifer | native | ||
| Perciformes | Gobiidae | Stiphodon atratus | native | ||
| Perciformes | Gobiidae | Stiphodon birdsong | native | ||
| Perciformes | Gobiidae | Stiphodon carisa | native | Lampung Hill-stream Goby | Lampung Hill-stream Goby |
| Perciformes | Gobiidae | Stiphodon ornatus | native | ||
| Perciformes | Gobiidae | Stiphodon semoni | native | ||
| Perciformes | Gobiidae | Stiphodon weberi | native | ||
| Perciformes | Gobiidae | Stiphodon zebrinus | native | ||
| Beloniformes | Belonidae | Strongylura krefftii | native | Long tom | |
| Beloniformes | Belonidae | Strongylura strongylura | native | Spottail needlefish | Loncong |
| Anguilliformes | Muraenidae | Strophidon sathete | native | Slender giant moray | |
| Cypriniformes | Cyprinidae | Sundadanio axelrodi | native | ||
| Clupeiformes | Sundasalangidae | Sundasalanx malleti | native | ||
| Clupeiformes | Sundasalangidae | Sundasalanx megalops | native | ||
| Clupeiformes | Sundasalangidae | Sundasalanx mesops | native | ||
| Clupeiformes | Sundasalangidae | Sundasalanx microps | native | ||
| Clupeiformes | Sundasalangidae | Sundasalanx platyrhynchus | native | Linut | |
| Cypriniformes | Balitoridae | Sundoreonectes obesus | native | ||
| Cypriniformes | Balitoridae | Sundoreonectes sabanus | native | ||
| Pleuronectiformes | Soleidae | Synaptura villosa | native | Velvety sole | |
| Cypriniformes | Cobitidae | Syncrossus hymenophysa | native | Tiger loach | Langli |
| Cypriniformes | Cobitidae | Syncrossus reversa | native | ||
| Atheriniformes | Telmatherinidae | Telmatherina abendanoni | endemic | ||
| Atheriniformes | Telmatherinidae | Telmatherina antoniae | endemic | ||
| Atheriniformes | Telmatherinidae | Telmatherina bonti | endemic | Bonti-bonti | |
| Atheriniformes | Telmatherinidae | Telmatherina celebensis | endemic | Celebes rainbow | Opudi |
| Atheriniformes | Telmatherinidae | Telmatherina obscura | endemic | ||
| Atheriniformes | Telmatherinidae | Telmatherina opudi | endemic | ||
| Atheriniformes | Telmatherinidae | Telmatherina prognatha | endemic | ||
| Atheriniformes | Telmatherinidae | Telmatherina sarasinorum | endemic | ||
| Atheriniformes | Telmatherinidae | Telmatherina wahjui | endemic | ||
| Clupeiformes | Clupeidae | Tenualosa macrura | native | Longtail shad | Terubuk |
| Perciformes | Terapontidae | Terapon jarbua | native | Jarbua terapon | Kerong-kerong |
| Tetraodontiformes | Tetraodontidae | Tetraodon biocellatus | native | Eyespot pufferfish | |
| Tetraodontiformes | Tetraodontidae | Tetraodon erythrotaenia | native | Red-striped toadfish | |
| Tetraodontiformes | Tetraodontidae | Tetraodon fluviatilis | native | Green pufferfish | Buntel mas |
| Tetraodontiformes | Tetraodontidae | Tetraodon kretamensis | native | ||
| Tetraodontiformes | Tetraodontidae | Tetraodon leiurus | native | ||
| Tetraodontiformes | Tetraodontidae | Tetraodon nigroviridis | native | Spotted green pufferfish | |
| Tetraodontiformes | Tetraodontidae | Tetraodon palembangensis | native | Buntal | |
| Tetraodontiformes | Tetraodontidae | Tetraodon sabahensis | native | ||
| Tetraodontiformes | Tetraodontidae | Tetraodon waandersii | native | ||
| Scorpaeniformes | Tetrarogidae | Tetraroge barbata | native | Bearded roguefish | |
| Scorpaeniformes | Tetrarogidae | Tetraroge niger | native | ||
| Clupeiformes | Engraulidae | Thryssa scratchleyi | native | New Guinea thryssa | |
| Cypriniformes | Cyprinidae | Thryssocypris ornithostoma | native | Seluang panjang | |
| Cypriniformes | Cyprinidae | Thryssocypris smaragdinus | native | Seluang panjang | |
| Cypriniformes | Cyprinidae | Thynnichthys polylepis | native | Bauk ketuk | |
| Cypriniformes | Cyprinidae | Thynnichthys thynnoides | native | Entukan | |
| Cypriniformes | Cyprinidae | Thynnichthys vaillanti | native | ||
| Cypriniformes | Cyprinidae | Tinca tinca | introduced | Tench | |
| Atheriniformes | Telmatherinidae | Tominanga aurea | native | ||
| Atheriniformes | Telmatherinidae | Tominanga sanguicauda | native | ||
| Beloniformes | Hemiramphidae | Tondanichthys kottelati | native | ||
| Cypriniformes | Cyprinidae | Tor douronensis | native | River carp | Kancera |
| Cypriniformes | Cyprinidae | Tor soro | native | ||
| Cypriniformes | Cyprinidae | Tor tambra | native | Sengkareng | |
| Cypriniformes | Cyprinidae | Tor tambroides | native | Thai mahseer | Garing |
| Perciformes | Toxotidae | Toxotes chatareus | native | Largescale archerfish | Sumpit |
| Perciformes | Toxotidae | Toxotes jaculatrix | native | Banded archerfish | Archerfish |
| Perciformes | Toxotidae | Toxotes lorentzi | native | Primitive archerfish | |
| Perciformes | Toxotidae | Toxotes microlepis | native | Smallscale archerfish | Puntin |
| Perciformes | Osphronemidae | Trichogaster leerii | native | Pearl gourami | Engkribang |
| Perciformes | Osphronemidae | Trichogaster pectoralis | introduced | Snakeskin gourami | Lampot |
| Perciformes | Osphronemidae | Trichogaster trichopterus | native | Three spot gourami | Sepat |
| Perciformes | Osphronemidae | Trichopsis pumila | native | Pygmy gourami | |
| Perciformes | Osphronemidae | Trichopsis vittata | native | Croaking gourami | Cupang |
| Cypriniformes | Cyprinidae | Trigonostigma hengeli | native | Glowlight rasbora | |
| Cypriniformes | Cyprinidae | Trigonostigma heteromorpha | native | Harlequin rasbora | |
| Perciformes | Gobiidae | Trypauchenichthys typus | native | ||
| Perciformes | Gobiidae | Trypauchenopsis intermedius | native | ||
| Cypriniformes | Balitoridae | Vaillantella cinnamomea | native | ||
| Cypriniformes | Balitoridae | Vaillantella euepiptera | native | ||
| Cypriniformes | Balitoridae | Vaillantella maassi | native | ||
| Mugiliformes | Mugilidae | Valamugil buchanani | native | Bluetail mullet | |
| Mugiliformes | Mugilidae | Valamugil seheli | native | Bluespot mullet | Gereh |
| Perciformes | Terapontidae | Variichthys jamoerensis | endemic | Jamur Lake grunter | |
| Siluriformes | Siluridae | Wallago attu | native | Wallago | Jambal |
| Siluriformes | Siluridae | Wallago leerii | native | Tapah | |
| Beloniformes | Belonidae | Xenentodon cancila | native | Freshwater garfish | |
| Beloniformes | Belonidae | Xenentodon canciloides | native | Kenyulung | |
| Beloniformes | Adrianichthyidae | Xenopoecilus oophorus | endemic | Eggcarrying buntingi | |
| Beloniformes | Adrianichthyidae | Xenopoecilus poptae | endemic | Popta's buntingi | |
| Beloniformes | Adrianichthyidae | Xenopoecilus sarasinorum | endemic | Sarasins minnow | |
| Tetraodontiformes | Tetraodontidae | Xenopterus naritus | native | Buntel lemas | |
| Cyprinodontiformes | Poeciliidae | Xiphophorus hellerii | introduced | Green swordtail | Suwadakar |
| Cyprinodontiformes | Poeciliidae | Xiphophorus maculatus | introduced | Southern platyfish | |
| Anguilliformes | Ophichthidae | Yirrkala gjellerupi | native | ||
| Anguilliformes | Ophichthidae | Yirrkala kaupii | native | ||
| Perciformes | Gobiidae | Zappa confluentus | native | New Guinea slender mudskipper | |
| Beloniformes | Hemiramphidae | Zenarchopterus alleni | endemic | Allen's river garfish | |
| Beloniformes | Hemiramphidae | Zenarchopterus caudovittatus | native | Long-jawed river garfish | |
| Beloniformes | Hemiramphidae | Zenarchopterus dux | native | ||
| Beloniformes | Hemiramphidae | Zenarchopterus ectuntio | native | Julang | |
| Beloniformes | Hemiramphidae | Zenarchopterus kampeni | native | Sepik River halfbeak | |
| Beloniformes | Hemiramphidae | Zenarchopterus novaeguineae | native | Fly River garfish | |
| Beloniformes | Hemiramphidae | Zenarchopterus ornithocephala | endemic | Vogelkop river garfish |
Page created by: Eli, 15.08.07, last modified by: Eli, 23.08.07 |