| Order | Family | Species | Status | FB name | Name |
| Cypriniformes | Cobitidae | Acanthopsoides molobrion | native | ||
| Cypriniformes | Cobitidae | Acanthopsoides robertsi | native | ||
| Cypriniformes | Cobitidae | Acantopsis choirorhynchos | native | Horseface loach | |
| Cypriniformes | Cobitidae | Acantopsis dialuzona | native | ||
| Pleuronectiformes | Soleidae | Achiroides leucorhynchos | native | ||
| Siluriformes | Akysidae | Acrochordonichthys falcifer | native | ||
| Siluriformes | Akysidae | Acrochordonichthys pachyderma | native | ||
| Siluriformes | Akysidae | Acrochordonichthys rugosus | native | ||
| Siluriformes | Akysidae | Acrochordonichthys septentrionalis | native | Maeklong chameleon catfish | |
| Siluriformes | Akysidae | Akysis hendricksoni | native | ||
| Siluriformes | Akysidae | Akysis microps | native | ||
| Cypriniformes | Cyprinidae | Albulichthys albuloides | native | ||
| Perciformes | Ambassidae | Ambassis gymnocephalus | native | Bald glassy | Pridin |
| Perciformes | Ambassidae | Ambassis interrupta | native | Long-spined glass perchlet | Pridin |
| Perciformes | Ambassidae | Ambassis urotaenia | native | Banded-tail glassy perchlet | |
| Siluriformes | Amblycipitidae | Amblyceps foratum | native | ||
| Cypriniformes | Cyprinidae | Amblypharyngodon atkinsonii | native | Burmese carplet | |
| Cypriniformes | Cyprinidae | Amblyrhynchichthys truncatus | native | Mata besar | |
| Perciformes | Anabantidae | Anabas testudineus | native | Climbing perch | Puyu |
| Anguilliformes | Anguillidae | Anguilla bicolor bicolor | native | Indonesian shortfin eel | Tuna |
| Anguilliformes | Anguillidae | Anguilla malgumora | native | Indonesian longfinned eel | Belud |
| Cyprinodontiformes | Aplocheilidae | Aplocheilus panchax | native | Blue panchax | Kepala timah |
| Perciformes | Apogonidae | Apogon hyalosoma | native | Humpbacked cardinalfish | Seriding |
| Cypriniformes | Cyprinidae | Aristichthys nobilis | not established | Bighead carp | Kap kepala besar |
| Siluriformes | Ariidae | Arius microcephalus | native | Squirrelheaded catfish | |
| Tetraodontiformes | Tetraodontidae | Auriglobus modestus | native | ||
| Tetraodontiformes | Tetraodontidae | Auriglobus nefastus | native | Greenbottle pufferfish | |
| Tetraodontiformes | Tetraodontidae | Auriglobus remotus | native | ||
| Siluriformes | Sisoridae | Bagarius bagarius | native | Dwarf goonch | |
| Siluriformes | Sisoridae | Bagarius yarrelli | native | Goonch | |
| Siluriformes | Bagridae | Bagrichthys hypselopterus | native | Blacklancer catfish | |
| Siluriformes | Bagridae | Bagrichthys macracanthus | native | Black lancer catfish | |
| Siluriformes | Bagridae | Bagrichthys macropterus | native | False black lancer | |
| Siluriformes | Bagridae | Bagroides melapterus | native | ||
| Cypriniformes | Cyprinidae | Balantiocheilos melanopterus | native | Tricolor sharkminnow | Hangus |
| Cypriniformes | Cyprinidae | Barbichthys laevis | native | Sucker barb | Batu hulu |
| Cypriniformes | Cyprinidae | Barbodes balleroides | native | ||
| Cypriniformes | Cyprinidae | Barbodes belinka | native | ||
| Cypriniformes | Cyprinidae | Barbodes strigatus | native | ||
| Cypriniformes | Cyprinidae | Barbodes sunieri | native | ||
| Cypriniformes | Cyprinidae | Barbonymus collingwoodii | native | ||
| Cypriniformes | Cyprinidae | Barbonymus gonionotus | introduced | Java barb | Lalawak |
| Cypriniformes | Cyprinidae | Barbonymus schwanenfeldii | native | Tinfoil barb | Kepia |
| Cypriniformes | Balitoridae | Barbucca diabolica | native | ||
| Siluriformes | Siluridae | Belodontichthys dinema | native | ||
| Perciformes | Osphronemidae | Belontia hasselti | native | Malay combtail | |
| Perciformes | Osphronemidae | Betta akarensis | native | Akar betta | |
| Perciformes | Osphronemidae | Betta anabatoides | native | Giant betta | |
| Perciformes | Osphronemidae | Betta balunga | native | ||
| Perciformes | Osphronemidae | Betta bellica | native | Slim betta | |
| Perciformes | Osphronemidae | Betta brownorum | native | ||
| Perciformes | Osphronemidae | Betta chini | native | ||
| Perciformes | Osphronemidae | Betta coccina | native | ||
| Perciformes | Osphronemidae | Betta gladiator | native | ||
| Perciformes | Osphronemidae | Betta hipposideros | native | ||
| Perciformes | Osphronemidae | Betta ibanorum | native | ||
| Perciformes | Osphronemidae | Betta imbellis | native | Crescent betta | |
| Perciformes | Osphronemidae | Betta lehi | native | ||
| Perciformes | Osphronemidae | Betta livida | native | ||
| Perciformes | Osphronemidae | Betta macrostoma | native | Spotfin betta | |
| Perciformes | Osphronemidae | Betta ocellata | native | ||
| Perciformes | Osphronemidae | Betta persephone | native | ||
| Perciformes | Osphronemidae | Betta pi | native | ||
| Perciformes | Osphronemidae | Betta picta | questionable | Spotted betta | |
| Perciformes | Osphronemidae | Betta pugnax | native | Penang betta | |
| Perciformes | Osphronemidae | Betta pulchra | native | ||
| Perciformes | Osphronemidae | Betta splendens | introduced | Siamese fighting fish | Belaga |
| Perciformes | Osphronemidae | Betta stigmosa | native | ||
| Perciformes | Osphronemidae | Betta taeniata | native | Borneo betta | |
| Perciformes | Osphronemidae | Betta tomi | native | ||
| Perciformes | Osphronemidae | Betta tussyae | native | ||
| Perciformes | Osphronemidae | Betta waseri | native | ||
| Synbranchiformes | Chaudhuriidae | Bihunichthys monopteroides | native | ||
| Perciformes | Sciaenidae | Boesemania microlepis | native | Boeseman croaker | |
| Perciformes | Gobiidae | Boleophthalmus boddarti | native | Boddart's goggle-eyed goby | |
| Cypriniformes | Cyprinidae | Boraras maculatus | native | Dwarf rasbora | |
| Cypriniformes | Cyprinidae | Boraras urophthalmoides | native | Least rasbora | |
| Pleuronectiformes | Soleidae | Brachirus panoides | native | ||
| Perciformes | Gobiidae | Brachygobius aggregatus | native | Schooling bumblebee goby | |
| Perciformes | Gobiidae | Brachygobius doriae | native | ||
| Perciformes | Gobiidae | Brachygobius kabiliensis | native | Kabili bumblebee goby | |
| Perciformes | Gobiidae | Brachygobius nunus | native | ||
| Perciformes | Gobiidae | Brachygobius xanthomelas | native | ||
| Perciformes | Eleotridae | Butis gymnopomus | native | Puntang | |
| Perciformes | Gobiidae | Calamiana kabilia | native | ||
| Cypriniformes | Cyprinidae | Carassius auratus auratus | introduced | Goldfish | Ikan mas |
| Carcharhiniformes | Carcharhinidae | Carcharhinus leucas | native | Bull shark | Yu |
| Tetraodontiformes | Tetraodontidae | Carinotetraodon borneensis | native | ||
| Tetraodontiformes | Tetraodontidae | Carinotetraodon lorteti | native | Redeye puffer | |
| Tetraodontiformes | Tetraodontidae | Carinotetraodon salivator | native | ||
| Cypriniformes | Cyprinidae | Catla catla | introduced | Catla | Pla kra ho |
| Siluriformes | Ariidae | Cephalocassis melanochir | native | ||
| Siluriformes | Siluridae | Ceratoglanis scleronema | native | ||
| Siluriformes | Chacidae | Chaca bankanensis | native | Angler catfish | |
| Perciformes | Chaetodontidae | Chaetodon adiergastos | native | Philippine butterflyfish | |
| Perciformes | Channidae | Channa bankanensis | native | ||
| Perciformes | Channidae | Channa baramensis | native | ||
| Perciformes | Channidae | Channa gachua | native | ||
| Perciformes | Channidae | Channa lucius | native | ||
| Perciformes | Channidae | Channa marulioides | native | ||
| Perciformes | Channidae | Channa melasoma | native | Black snakehead | |
| Perciformes | Channidae | Channa micropeltes | native | Giant snakehead | Toman |
| Perciformes | Channidae | Channa orientalis | native | Walking snakehead | |
| Perciformes | Channidae | Channa punctata | questionable | Spotted snakehead | |
| Perciformes | Channidae | Channa striata | native | Snakehead murrel | Haruan |
| Synbranchiformes | Chaudhuriidae | Chaudhuria caudata | native | Burmese spineless eel | |
| Cypriniformes | Cyprinidae | Chela laubuca | native | Indian glass barb | |
| Cypriniformes | Cyprinidae | Chela maassi | native | ||
| Synbranchiformes | Chaudhuriidae | Chendol keelini | native | ||
| Orectolobiformes | Hemiscylliidae | Chiloscyllium indicum | native | Slender bambooshark | Yu bodoh |
| Osteoglossiformes | Notopteridae | Chitala borneensis | native | ||
| Osteoglossiformes | Notopteridae | Chitala chitala | misidentification | Clown knifefish | Belida |
| Osteoglossiformes | Notopteridae | Chitala lopis | native | Giant featherback | |
| Cypriniformes | Cyprinidae | Cirrhinus chinensis | introduced | Chinese mud carp | Kap lumpur |
| Cypriniformes | Cyprinidae | Cirrhinus cirrhosus | introduced | Mrigal | Mrigal |
| Siluriformes | Clariidae | Clarias anfractus | native | ||
| Siluriformes | Clariidae | Clarias batrachus | native | Walking catfish | Keli |
| Siluriformes | Clariidae | Clarias batu | endemic | ||
| Siluriformes | Clariidae | Clarias gariepinus | introduced | North African catfish | |
| Siluriformes | Clariidae | Clarias leiacanthus | native | ||
| Siluriformes | Clariidae | Clarias macrocephalus | introduced | Bighead catfish | Keli |
| Siluriformes | Clariidae | Clarias planiceps | native | ||
| Siluriformes | Clariidae | Clarias sulcatus | native | ||
| Siluriformes | Clariidae | Clarias teijsmanni | native | ||
| Clupeiformes | Clupeidae | Clupeichthys perakensis | native | Perak river sprat | |
| Siluriformes | Schilbeidae | Clupisoma sinensis | native | ||
| Clupeiformes | Engraulidae | Coilia lindmani | native | Lindman's grenadier anchovy | |
| Clupeiformes | Clupeidae | Corica laciniata | native | Bangkok river sprat | |
| Clupeiformes | Clupeidae | Corica soborna | native | Ganges river sprat | |
| Cypriniformes | Cyprinidae | Cosmochilus falcifer | native | ||
| Cypriniformes | Cyprinidae | Crossocheilus cobitis | native | ||
| Cypriniformes | Cyprinidae | Crossocheilus langei | native | ||
| Cypriniformes | Cyprinidae | Crossocheilus nigriloba | native | ||
| Cypriniformes | Cyprinidae | Crossocheilus oblongus | native | Siamese flying fox | |
| Cypriniformes | Cyprinidae | Crossocheilus siamensis | native | Siamese algae-eater | |
| Cypriniformes | Cyprinidae | Ctenopharyngodon idella | not established | Grass carp | Kap rumput |
| Cypriniformes | Cyprinidae | Cyclocheilichthys apogon | native | Beardless barb | |
| Cypriniformes | Cyprinidae | Cyclocheilichthys armatus | native | ||
| Cypriniformes | Cyprinidae | Cyclocheilichthys enoplus | native | ||
| Cypriniformes | Cyprinidae | Cyclocheilichthys repasson | native | ||
| Pleuronectiformes | Cynoglossidae | Cynoglossus feldmanni | native | River tonguesole | |
| Pleuronectiformes | Cynoglossidae | Cynoglossus kapuasensis | native | ||
| Pleuronectiformes | Cynoglossidae | Cynoglossus microlepis | native | Smallscale tonguesole | |
| Pleuronectiformes | Cynoglossidae | Cynoglossus waandersii | native | ||
| Cypriniformes | Cyprinidae | Cyprinus carpio carpio | introduced | Common carp | Leekoh |
| Cypriniformes | Cyprinidae | Danio albolineatus | native | Pearl danio | |
| Cypriniformes | Cyprinidae | Danio kerri | native | Blue danio | |
| Perciformes | Datnioididae | Datnioides polota | native | ||
| Beloniformes | Hemiramphidae | Dermogenys bispina | native | ||
| Beloniformes | Hemiramphidae | Dermogenys collettei | native | ||
| Beloniformes | Hemiramphidae | Dermogenys pusilla | native | Wrestling halfbeak | |
| Cypriniformes | Cyprinidae | Discherodontus halei | native | ||
| Syngnathiformes | Syngnathidae | Doryichthys boaja | native | Undok-undok | |
| Syngnathiformes | Syngnathidae | Doryichthys deokhatoides | native | ||
| Syngnathiformes | Syngnathidae | Doryichthys martensii | native | ||
| Cypriniformes | Cyprinidae | Eirmotus octozona | native | ||
| Perciformes | Eleotridae | Eleotris melanosoma | native | Broadhead sleeper | |
| Cypriniformes | Balitoridae | Ellopostoma megalomycter | native | ||
| Siluriformes | Clariidae | Encheloclarias baculum | native | ||
| Siluriformes | Clariidae | Encheloclarias curtisoma | native | ||
| Siluriformes | Clariidae | Encheloclarias kelioides | native | ||
| Siluriformes | Clariidae | Encheloclarias prolatus | native | ||
| Cypriniformes | Cyprinidae | Epalzeorhynchos kalopterus | native | Flying fox | |
| Cypriniformes | Cyprinidae | Esomus malayensis | native | Malayan flying barb | |
| Cypriniformes | Cyprinidae | Esomus metallicus | native | ||
| Perciformes | Cichlidae | Etroplus suratensis | introduced | Green chromide | |
| Perciformes | Gobiidae | Eugnathogobius oligactis | native | ||
| Perciformes | Gobiidae | Eugnathogobius paludosus | native | ||
| Perciformes | Gobiidae | Eugnathogobius siamensis | native | ||
| Cyprinodontiformes | Poeciliidae | Gambusia affinis | introduced | Mosquitofish | |
| Cypriniformes | Cyprinidae | Garra borneensis | native | Batduan | |
| Cypriniformes | Cyprinidae | Garra cambodgiensis | native | Stonelapping minnow | |
| Cypriniformes | Balitoridae | Gastromyzon aequabilis | native | ||
| Cypriniformes | Balitoridae | Gastromyzon aeroides | native | ||
| Cypriniformes | Balitoridae | Gastromyzon auronigrus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon bario | native | ||
| Cypriniformes | Balitoridae | Gastromyzon borneensis | native | ||
| Cypriniformes | Balitoridae | Gastromyzon cornusaccus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon crenastus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon ctenocephalus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon danumensis | native | ||
| Cypriniformes | Balitoridae | Gastromyzon extrorsus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon farragus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon fasciatus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon ingeri | native | ||
| Cypriniformes | Balitoridae | Gastromyzon introrsus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon katibasensis | native | ||
| Cypriniformes | Balitoridae | Gastromyzon lepidogaster | native | ||
| Cypriniformes | Balitoridae | Gastromyzon megalepis | native | ||
| Cypriniformes | Balitoridae | Gastromyzon monticola | native | ||
| Cypriniformes | Balitoridae | Gastromyzon ocellatus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon ornaticauda | native | ||
| Cypriniformes | Balitoridae | Gastromyzon pariclavis | native | ||
| Cypriniformes | Balitoridae | Gastromyzon punctulatus | native | Hillstream loach | |
| Cypriniformes | Balitoridae | Gastromyzon ridens | native | ||
| Cypriniformes | Balitoridae | Gastromyzon scitulus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon spectabilis | native | ||
| Cypriniformes | Balitoridae | Gastromyzon stellatus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon umbrus | native | ||
| Cypriniformes | Balitoridae | Gastromyzon viriosus | native | ||
| Perciformes | Gerreidae | Gerres filamentosus | native | Whipfin silverbiddy | Kekapas |
| Cypriniformes | Balitoridae | Glaniopsis denudata | native | ||
| Cypriniformes | Balitoridae | Glaniopsis gossei | native | ||
| Cypriniformes | Balitoridae | Glaniopsis hanitschi | native | ||
| Cypriniformes | Balitoridae | Glaniopsis multiradiata | native | ||
| Perciformes | Gobiidae | Glossogobius aureus | native | Golden tank goby | Belukor |
| Perciformes | Gobiidae | Glossogobius celebius | native | Celebes goby | |
| Perciformes | Gobiidae | Glossogobius circumspectus | native | Circumspect goby | |
| Perciformes | Gobiidae | Glossogobius giuris | native | Tank goby | Bekulor |
| Siluriformes | Sisoridae | Glyptothorax major | native | ||
| Siluriformes | Sisoridae | Glyptothorax platypogon | native | ||
| Siluriformes | Sisoridae | Glyptothorax platypogonides | native | ||
| Siluriformes | Sisoridae | Glyptothorax siamensis | native | ||
| Perciformes | Gobiidae | Gobiopterus chuno | native | ||
| Perciformes | Ambassidae | Gymnochanda filamentosa | native | ||
| Cypriniformes | Cyprinidae | Hampala ampalong | native | ||
| Cypriniformes | Cyprinidae | Hampala bimaculata | native | ||
| Cypriniformes | Cyprinidae | Hampala macrolepidota | native | Hampala barb | Sebarau |
| Cypriniformes | Cyprinidae | Hampala sabana | native | ||
| Perciformes | Helostomatidae | Helostoma temminkii | native | Kissing gourami | Temakang |
| Siluriformes | Ariidae | Hemiarius harmandi | native | ||
| Siluriformes | Bagridae | Hemibagrus baramensis | native | ||
| Siluriformes | Bagridae | Hemibagrus bongan | native | ||
| Siluriformes | Bagridae | Hemibagrus chrysops | native | ||
| Siluriformes | Bagridae | Hemibagrus fortis | native | ||
| Siluriformes | Bagridae | Hemibagrus furcatus | native | ||
| Siluriformes | Bagridae | Hemibagrus gracilis | native | ||
| Siluriformes | Bagridae | Hemibagrus hoevenii | native | ||
| Siluriformes | Bagridae | Hemibagrus johorensis | native | ||
| Siluriformes | Bagridae | Hemibagrus nemurus | native | Asian redtail catfish | Baung |
| Siluriformes | Bagridae | Hemibagrus planiceps | native | ||
| Siluriformes | Bagridae | Hemibagrus sabanus | native | ||
| Siluriformes | Bagridae | Hemibagrus wyckii | native | ||
| Perciformes | Gobiidae | Hemigobius hoevenii | native | ||
| Beloniformes | Hemiramphidae | Hemirhamphodon kuekenthali | native | ||
| Beloniformes | Hemiramphidae | Hemirhamphodon pogonognathus | native | ||
| Rajiformes | Dasyatidae | Himantura signifer | native | White-edge freshwater whip ray | Pari |
| Cypriniformes | Balitoridae | Homaloptera leonardi | native | ||
| Cypriniformes | Balitoridae | Homaloptera nebulosa | native | ||
| Cypriniformes | Balitoridae | Homaloptera nigra | native | ||
| Cypriniformes | Balitoridae | Homaloptera ogilviei | native | ||
| Cypriniformes | Balitoridae | Homaloptera ophiolepis | native | ||
| Cypriniformes | Balitoridae | Homaloptera orthogoniata | native | ||
| Cypriniformes | Balitoridae | Homaloptera parclitella | native | ||
| Cypriniformes | Balitoridae | Homaloptera smithi | native | ||
| Cypriniformes | Balitoridae | Homaloptera stephensoni | native | ||
| Cypriniformes | Balitoridae | Homaloptera tweediei | native | ||
| Cypriniformes | Balitoridae | Homaloptera wassinkii | native | ||
| Cypriniformes | Balitoridae | Homaloptera zollingeri | native | ||
| Siluriformes | Bagridae | Hyalobagrus ornatus | native | ||
| Cypriniformes | Balitoridae | Hypergastromyzon eubranchus | native | ||
| Cypriniformes | Cyprinidae | Hypophthalmichthys molitrix | not established | Silver carp | Kap perak |
| Beloniformes | Hemiramphidae | Hyporhamphus limbatus | native | Congaturi halfbeak | Jolong-jolong |
| Siluriformes | Loricariidae | Hypostomus plecostomus | introduced | Suckermouth catfish | |
| Cypriniformes | Cyprinidae | Hypsibarbus pierrei | native | ||
| Syngnathiformes | Syngnathidae | Ichthyocampus carce | native | ||
| Clupeiformes | Pristigasteridae | Ilisha megaloptera | native | Bigeye ilisha | Puput |
| Gasterosteiformes | Indostomidae | Indostomus paradoxus | native | Armoured stickleback | |
| Perciformes | Gobiidae | Istigobius diadema | native | ||
| Perciformes | Sciaenidae | Johnius borneensis | native | Sharpnose hammer croaker | Tengkerong |
| Perciformes | Sciaenidae | Johnius coitor | native | Coitor croaker | |
| Perciformes | Sciaenidae | Johnius trachycephalus | native | Leaftail croaker | |
| Cypriniformes | Balitoridae | Katibasia insidiosa | native | ||
| Siluriformes | Ariidae | Ketengus typus | native | Bigmouth sea catfish | |
| Cypriniformes | Cobitidae | Kottelatlimia katik | native | ||
| Cypriniformes | Cobitidae | Kottelatlimia pristes | native | ||
| Siluriformes | Siluridae | Kryptopterus baramensis | native | ||
| Siluriformes | Siluridae | Kryptopterus bicirrhis | native | Glass catfish | |
| Siluriformes | Siluridae | Kryptopterus cryptopterus | native | ||
| Siluriformes | Siluridae | Kryptopterus lais | native | ||
| Siluriformes | Siluridae | Kryptopterus limpok | native | Long-barbel sheatfish | |
| Siluriformes | Siluridae | Kryptopterus macrocephalus | native | Striped glass catfish | |
| Siluriformes | Siluridae | Kryptopterus sabanus | native | ||
| Cypriniformes | Cyprinidae | Labeo chrysophekadion | native | ||
| Cypriniformes | Cyprinidae | Labeo rohita | not established | Rohu | Rohu |
| Cypriniformes | Cyprinidae | Labiobarbus fasciatus | native | ||
| Cypriniformes | Cyprinidae | Labiobarbus festivus | native | Signal barb | |
| Cypriniformes | Cyprinidae | Labiobarbus leptocheila | native | ||
| Cypriniformes | Cyprinidae | Labiobarbus ocellatus | native | ||
| Cypriniformes | Cyprinidae | Labiobarbus sabanus | native | ||
| Siluriformes | Schilbeidae | Laides hexanema | native | ||
| Siluriformes | Bagridae | Leiocassis collinus | native | ||
| Siluriformes | Bagridae | Leiocassis doriae | native | ||
| Siluriformes | Bagridae | Leiocassis hosii | native | ||
| Siluriformes | Bagridae | Leiocassis micropogon | native | ||
| Siluriformes | Bagridae | Leiocassis poecilopterus | native | ||
| Siluriformes | Bagridae | Leiocassis saravacensis | native | ||
| Cypriniformes | Cobitidae | Lepidocephalichthys berdmorei | native | Burmese loach | |
| Cypriniformes | Cobitidae | Lepidocephalichthys birmanicus | native | ||
| Cypriniformes | Cobitidae | Lepidocephalichthys hasselti | native | ||
| Cypriniformes | Cobitidae | Lepidocephalichthys sandakanensis | native | ||
| Cypriniformes | Cobitidae | Lepidocephalus macrochir | native | ||
| Cypriniformes | Cyprinidae | Leptobarbus hoevenii | native | Mad barb | Jelawat |
| Cypriniformes | Cyprinidae | Leptobarbus hosii | native | ||
| Cypriniformes | Cyprinidae | Leptobarbus melanotaenia | native | ||
| Scorpaeniformes | Synanceiidae | Leptosynanceia asteroblepa | native | ||
| Mugiliformes | Mugilidae | Liza parmata | native | Broad-mouthed mullet | |
| Mugiliformes | Mugilidae | Liza subviridis | native | Greenback mullet | Belanak |
| Mugiliformes | Mugilidae | Liza tade | native | Tade mullet | Belanak |
| Mugiliformes | Mugilidae | Liza vaigiensis | native | Squaretail mullet | Pelung |
| Cypriniformes | Cyprinidae | Lobocheilos bo | native | ||
| Cypriniformes | Cyprinidae | Lobocheilos falcifer | native | ||
| Cypriniformes | Cyprinidae | Lobocheilos ovalis | native | ||
| Cypriniformes | Cyprinidae | Lobocheilos terminalis | native | ||
| Cypriniformes | Cyprinidae | Lobocheilos unicornis | native | ||
| Perciformes | Gobiidae | Lophogobius bleekeri | native | ||
| Perciformes | Osphronemidae | Luciocephalus pulcher | native | Pikehead | Tembok tebing |
| Cypriniformes | Cyprinidae | Luciosoma pellegrinii | native | ||
| Cypriniformes | Cyprinidae | Luciosoma setigerum | native | ||
| Cypriniformes | Cyprinidae | Luciosoma spilopleura | native | Apollo sharkminnow | |
| Cypriniformes | Cyprinidae | Luciosoma trinema | native | ||
| Perciformes | Lutjanidae | Lutjanus argentimaculatus | native | Mangrove red snapper | Ungar |
| Perciformes | Lutjanidae | Lutjanus maxweberi | native | Pygmy snapper | |
| Clupeiformes | Engraulidae | Lycothrissa crocodilus | native | Sabretoothed thryssa | |
| Cypriniformes | Cyprinidae | Macrochirichthys macrochirus | native | Sward minnow | Parang sungai |
| Synbranchiformes | Mastacembelidae | Macrognathus aculeatus | native | Lesser spiny eel | |
| Synbranchiformes | Mastacembelidae | Macrognathus circumcinctus | native | ||
| Synbranchiformes | Mastacembelidae | Macrognathus keithi | native | ||
| Synbranchiformes | Mastacembelidae | Macrognathus maculatus | native | Frecklefin eel | Ikan t'pachi |
| Perciformes | Osphronemidae | Macropodus opercularis | native | Paradise fish | |
| Synbranchiformes | Synbranchidae | Macrotrema caligans | native | ||
| Synbranchiformes | Mastacembelidae | Mastacembelus armatus | native | Zig-zag eel | |
| Synbranchiformes | Mastacembelidae | Mastacembelus erythrotaenia | native | Fire eel | |
| Synbranchiformes | Mastacembelidae | Mastacembelus notophthalmus | native | ||
| Synbranchiformes | Mastacembelidae | Mastacembelus unicolor | native | ||
| Elopiformes | Megalopidae | Megalops cyprinoides | native | Indo-Pacific tarpon | Pipih |
| Siluriformes | Siluridae | Micronema hexapterus | native | ||
| Siluriformes | Siluridae | Micronema platypogon | native | ||
| Perciformes | Centrarchidae | Micropterus salmoides | introduced | Largemouth bass | |
| Perciformes | Monodactylidae | Monodactylus argenteus | native | Silver moony | Gedabang |
| Synbranchiformes | Synbranchidae | Monopterus albus | native | Swamp eel | Belut |
| Mugiliformes | Mugilidae | Mugil cephalus | native | Flathead mullet | Belanak |
| Perciformes | Gobiidae | Mugilogobius rambaiae | native | Queen of Siam goby | |
| Anguilliformes | Muraenesocidae | Muraenesox cinereus | native | Daggertooth pike conger | Malong |
| Cypriniformes | Cyprinidae | Mylopharyngodon piceus | questionable | Black carp | Kap hitam |
| Cypriniformes | Cyprinidae | Mystacoleucus marginatus | native | Sia | |
| Siluriformes | Bagridae | Mystus armiger | native | ||
| Siluriformes | Bagridae | Mystus castaneus | native | ||
| Siluriformes | Bagridae | Mystus cavasius | misidentification | Gangetic mystus | |
| Siluriformes | Bagridae | Mystus gulio | native | Long whiskers catfish | |
| Siluriformes | Bagridae | Mystus micracanthus | native | Twospot catfish | |
| Siluriformes | Bagridae | Mystus nigriceps | native | ||
| Siluriformes | Bagridae | Mystus singaringan | native | ||
| Siluriformes | Bagridae | Mystus vittatus | questionable | Striped dwarf catfish | Baung |
| Siluriformes | Bagridae | Mystus wolffii | native | ||
| Synbranchiformes | Chaudhuriidae | Nagaichthys filipes | native | ||
| Perciformes | Nandidae | Nandus nandus | questionable | Gangetic leaffish | |
| Perciformes | Nandidae | Nandus nebulosus | native | Bornean leaffish | |
| Perciformes | Nandidae | Nandus prolixus | native | ||
| Siluriformes | Bagridae | Nanobagrus nebulosus | native | ||
| Cypriniformes | Balitoridae | Nemacheilus elegantissimus | native | ||
| Cypriniformes | Balitoridae | Nemacheilus kapuasensis | native | ||
| Cypriniformes | Balitoridae | Nemacheilus longipectoralis | native | ||
| Cypriniformes | Balitoridae | Nemacheilus masyai | native | Arrow loach | |
| Cypriniformes | Balitoridae | Nemacheilus olivaceus | native | ||
| Cypriniformes | Balitoridae | Nemacheilus saravacensis | native | ||
| Cypriniformes | Balitoridae | Nemacheilus selangoricus | native | ||
| Cypriniformes | Balitoridae | Nemacheilus spiniferus | native | ||
| Cypriniformes | Cyprinidae | Nematabramis alestes | native | Dumpis | |
| Cypriniformes | Cyprinidae | Nematabramis borneensis | native | ||
| Cypriniformes | Cyprinidae | Nematabramis everetti | native | ||
| Cypriniformes | Cyprinidae | Nematabramis steindachneri | native | Dumpis | |
| Cypriniformes | Cyprinidae | Neobarynotus microlepis | native | ||
| Cypriniformes | Balitoridae | Neogastromyzon chini | native | ||
| Cypriniformes | Balitoridae | Neogastromyzon crassiobex | native | ||
| Cypriniformes | Balitoridae | Neogastromyzon nieuwenhuisii | native | ||
| Cypriniformes | Balitoridae | Neogastromyzon pauciradiatus | native | ||
| Cypriniformes | Balitoridae | Neohomaloptera johorensis | native | ||
| Cypriniformes | Cyprinidae | Neolissochilus hendersoni | native | ||
| Cypriniformes | Cyprinidae | Neolissochilus hexagonolepis | native | Copper mahseer | |
| Cypriniformes | Cyprinidae | Neolissochilus soroides | native | ||
| Cypriniformes | Cyprinidae | Neolissochilus tweediei | native | ||
| Atheriniformes | Phallostethidae | Neostethus bicornis | native | ||
| Atheriniformes | Phallostethidae | Neostethus borneensis | native | ||
| Atheriniformes | Phallostethidae | Neostethus lankesteri | native | ||
| Osteoglossiformes | Notopteridae | Notopterus notopterus | native | Bronze featherback | Belida |
| Perciformes | Eleotridae | Odonteleotris macrodon | native | Gangetic sleeper | |
| Siluriformes | Siluridae | Ompok eugeneiatus | native | Malay glass catfish | |
| Siluriformes | Siluridae | Ompok fumidus | native | ||
| Siluriformes | Siluridae | Ompok hypophthalmus | native | ||
| Siluriformes | Siluridae | Ompok jaynei | native | ||
| Siluriformes | Siluridae | Ompok leiacanthus | native | ||
| Siluriformes | Siluridae | Ompok rhadinurus | native | ||
| Salmoniformes | Salmonidae | Oncorhynchus mykiss | not established | Rainbow trout | |
| Perciformes | Eleotridae | Ophiocara porocephala | native | Northern mud gudgeon | |
| Synbranchiformes | Synbranchidae | Ophisternon bengalense | native | Bengal eel | |
| Perciformes | Cichlidae | Oreochromis mossambicus | introduced | Mozambique tilapia | Tilapia |
| Perciformes | Cichlidae | Oreochromis niloticus niloticus | introduced | Nile tilapia | |
| Perciformes | Cichlidae | Oreochromis urolepis hornorum | not established | Wami tilapia | |
| Beloniformes | Adrianichthyidae | Oryzias javanicus | native | Javanese ricefish | |
| Perciformes | Osphronemidae | Osphronemus goramy | native | Giant gourami | Kalui |
| Perciformes | Osphronemidae | Osphronemus laticlavius | native | Giant red tail gourami | |
| Perciformes | Osphronemidae | Osphronemus septemfasciatus | native | ||
| Cypriniformes | Cyprinidae | Osteochilus chini | native | ||
| Cypriniformes | Cyprinidae | Osteochilus enneaporus | native | ||
| Cypriniformes | Cyprinidae | Osteochilus harrisoni | native | ||
| Cypriniformes | Cyprinidae | Osteochilus hasseltii | native | Silver sharkminnow | Terbol |
| Cypriniformes | Cyprinidae | Osteochilus ingeri | native | ||
| Cypriniformes | Cyprinidae | Osteochilus intermedius | native | ||
| Cypriniformes | Cyprinidae | Osteochilus kahajanensis | native | ||
| Cypriniformes | Cyprinidae | Osteochilus melanopleurus | native | ||
| Cypriniformes | Cyprinidae | Osteochilus microcephalus | native | ||
| Cypriniformes | Cyprinidae | Osteochilus sarawakensis | native | ||
| Cypriniformes | Cyprinidae | Osteochilus spilurus | native | Toros | |
| Cypriniformes | Cyprinidae | Osteochilus triporos | native | ||
| Cypriniformes | Cyprinidae | Osteochilus waandersii | native | ||
| Perciformes | Eleotridae | Oxyeleotris marmorata | native | Marble goby | Belantuk |
| Perciformes | Eleotridae | Oxyeleotris urophthalmoides | native | ||
| Perciformes | Eleotridae | Oxyeleotris urophthalmus | native | ||
| Cypriniformes | Cyprinidae | Oxygaster anomalura | native | Lalang | |
| Cypriniformes | Cyprinidae | Paedocypris micromegethes | native | ||
| Siluriformes | Pangasiidae | Pangasius djambal | native | ||
| Siluriformes | Pangasiidae | Pangasius kinabatanganensis | native | ||
| Siluriformes | Pangasiidae | Pangasius kunyit | native | ||
| Siluriformes | Pangasiidae | Pangasius nasutus | native | ||
| Siluriformes | Pangasiidae | Pangasius pangasius | misidentification | Yellowtail catfish | Patin |
| Siluriformes | Pangasiidae | Pangasius polyuranodon | native | ||
| Siluriformes | Pangasiidae | Pangasius sabahensis | native | ||
| Siluriformes | Pangasiidae | Pangasius tubbi | native | ||
| Cypriniformes | Cobitidae | Pangio agma | native | ||
| Cypriniformes | Cobitidae | Pangio alcoides | native | ||
| Cypriniformes | Cobitidae | Pangio anguillaris | native | ||
| Cypriniformes | Cobitidae | Pangio cuneovirgata | native | ||
| Cypriniformes | Cobitidae | Pangio doriae | native | ||
| Cypriniformes | Cobitidae | Pangio filinaris | native | ||
| Cypriniformes | Cobitidae | Pangio incognito | native | ||
| Cypriniformes | Cobitidae | Pangio kuhlii | native | Coolie loach | |
| Cypriniformes | Cobitidae | Pangio malayana | native | ||
| Cypriniformes | Cobitidae | Pangio mariarum | native | ||
| Cypriniformes | Cobitidae | Pangio oblonga | native | Java loach | |
| Cypriniformes | Cobitidae | Pangio piperata | native | ||
| Cypriniformes | Cobitidae | Pangio semicincta | native | ||
| Cypriniformes | Cobitidae | Pangio shelfordii | native | Borneo loach | |
| Cypriniformes | Cyprinidae | Parachela hypophthalmus | native | ||
| Cypriniformes | Cyprinidae | Parachela maculicauda | native | ||
| Cypriniformes | Cyprinidae | Parachela oxygastroides | native | Glass fish | Lalang |
| Cypriniformes | Cyprinidae | Paracrossochilus acerus | native | ||
| Cypriniformes | Cyprinidae | Paracrossochilus vittatus | native | ||
| Siluriformes | Akysidae | Parakysis grandis | native | ||
| Siluriformes | Akysidae | Parakysis longirostris | native | ||
| Siluriformes | Akysidae | Parakysis verrucosus | native | ||
| Cypriniformes | Cyprinidae | Paralaubuca typus | native | ||
| Perciformes | Ambassidae | Parambassis apogonoides | native | Iridescent glassy perchlet | |
| Perciformes | Ambassidae | Parambassis ranga | native | Indian glassy fish | |
| Perciformes | Ambassidae | Parambassis siamensis | native | ||
| Perciformes | Ambassidae | Parambassis wolffii | native | Duskyfin glassy perchlet | |
| Perciformes | Gobiidae | Parawaous megacephalus | native | ||
| Cypriniformes | Balitoridae | Parhomaloptera microstoma | native | ||
| Perciformes | Osphronemidae | Parosphromenus alfredi | native | ||
| Perciformes | Osphronemidae | Parosphromenus allani | native | ||
| Perciformes | Osphronemidae | Parosphromenus harveyi | native | ||
| Perciformes | Osphronemidae | Parosphromenus nagyi | endemic | ||
| Perciformes | Osphronemidae | Parosphromenus paludicola | native | ||
| Perciformes | Osphronemidae | Parosphromenus rubrimontis | native | ||
| Perciformes | Osphronemidae | Parosphromenus tweediei | native | ||
| Clupeiformes | Pristigasteridae | Pellona ditchela | native | Indian pellona | Puput |
| Perciformes | Gobiidae | Periophthalmus argentilineatus | native | Barred mudskipper | |
| Siluriformes | Siluridae | Phalacronotus apogon | native | ||
| Siluriformes | Siluridae | Phalacronotus micronemus | native | ||
| Siluriformes | Siluridae | Phalacronotus parvanalis | native | ||
| Atheriniformes | Phallostethidae | Phallostethus dunckeri | endemic | ||
| Atheriniformes | Phallostethidae | Phenacostethus posthon | native | ||
| Atheriniformes | Phallostethidae | Phenacostethus smithi | native | Smith's priapium fish | |
| Atheriniformes | Phallostethidae | Phenacostethus trewavasae | native | ||
| Cyprinodontiformes | Poeciliidae | Poecilia reticulata | introduced | Guppy | |
| Perciformes | Polynemidae | Polynemus dubius | native | Eastern paradise fish | |
| Perciformes | Polynemidae | Polynemus hornadayi | native | Hornaday's paradise fish | |
| Perciformes | Polynemidae | Polynemus melanochir melanochir | native | Blackhand paradise fish | |
| Cypriniformes | Cyprinidae | Poropuntius birtwistlei | native | ||
| Cypriniformes | Cyprinidae | Poropuntius malcolmi | native | Goldfin tinfoil barb | |
| Cypriniformes | Cyprinidae | Poropuntius smedleyi | native | ||
| Pristiformes | Pristidae | Pristis microdon | native | Largetooth sawfish | |
| Pristiformes | Pristidae | Pristis zijsron | native | Longcomb sawfish | |
| Perciformes | Nandidae | Pristolepis fasciata | native | Catopra | |
| Perciformes | Nandidae | Pristolepis grootii | native | Indonesian leaffish | |
| Cypriniformes | Cyprinidae | Probarbus jullieni | native | Isok barb | Temoleh |
| Cypriniformes | Balitoridae | Protomyzon aphelocheilus | native | ||
| Cypriniformes | Balitoridae | Protomyzon borneensis | native | ||
| Cypriniformes | Balitoridae | Protomyzon griswoldi | native | ||
| Cypriniformes | Balitoridae | Protomyzon whiteheadi | native | ||
| Perciformes | Gobiidae | Pseudapocryptes borneensis | native | ||
| Perciformes | Gobiidae | Pseudapocryptes elongatus | native | Belacak | |
| Siluriformes | Akysidae | Pseudobagarius alfredi | native | ||
| Perciformes | Gobiidae | Pseudogobius javanicus | native | ||
| Cypriniformes | Balitoridae | Pseudohomaloptera tatereganii | native | ||
| Siluriformes | Pangasiidae | Pseudolais micronemus | native | Shortbarbel pangasius | |
| Siluriformes | Bagridae | Pseudomystus fumosus | native | ||
| Siluriformes | Bagridae | Pseudomystus fuscus | native | ||
| Siluriformes | Bagridae | Pseudomystus inornatus | native | ||
| Siluriformes | Bagridae | Pseudomystus leiacanthus | native | ||
| Siluriformes | Bagridae | Pseudomystus robustus | native | ||
| Siluriformes | Bagridae | Pseudomystus stenomus | native | ||
| Perciformes | Osphronemidae | Pseudosphromenus cupanus | native | Spiketail paradisefish | |
| Perciformes | Gobiidae | Pseudotrypauchen multiradiatus | native | ||
| Siluriformes | Siluridae | Pterocryptis cochinchinensis | native | ||
| Siluriformes | Siluridae | Pterocryptis furnessi | native | ||
| Siluriformes | Loricariidae | Pterygoplichthys pardalis | introduced | Amazon sailfin catfish | |
| Cypriniformes | Cyprinidae | Puntioplites bulu | native | Ikan temelian | |
| Cypriniformes | Cyprinidae | Puntioplites proctozystron | native | ||
| Cypriniformes | Cyprinidae | Puntioplites waandersi | native | ||
| Cypriniformes | Cyprinidae | Puntius banksi | native | ||
| Cypriniformes | Cyprinidae | Puntius binotatus | native | Spotted barb | Putih |
| Cypriniformes | Cyprinidae | Puntius brevis | native | ||
| Cypriniformes | Cyprinidae | Puntius dunckeri | native | Bigspot barb | |
| Cypriniformes | Cyprinidae | Puntius everetti | native | Clown barb | |
| Cypriniformes | Cyprinidae | Puntius hexazona | native | ||
| Cypriniformes | Cyprinidae | Puntius johorensis | native | Striped barb | |
| Cypriniformes | Cyprinidae | Puntius kuchingensis | native | ||
| Cypriniformes | Cyprinidae | Puntius lateristriga | native | Spanner barb | |
| Cypriniformes | Cyprinidae | Puntius lineatus | native | Lined barb | |
| Cypriniformes | Cyprinidae | Puntius orphoides | native | Javaen barb | |
| Cypriniformes | Cyprinidae | Puntius partipentazona | native | ||
| Cypriniformes | Cyprinidae | Puntius pentazona | native | Fiveband barb | |
| Cypriniformes | Cyprinidae | Puntius sealei | native | Turungau | |
| Cypriniformes | Cyprinidae | Puntius tetrazona | native | Sumatra barb | |
| Cypriniformes | Cyprinidae | Raiamas guttatus | native | Burmese trout | |
| Cypriniformes | Cyprinidae | Rasbora agilis | native | ||
| Cypriniformes | Cyprinidae | Rasbora argyrotaenia | native | Silver rasbora | Buntung |
| Cypriniformes | Cyprinidae | Rasbora aurotaenia | native | Pale rasbora | |
| Cypriniformes | Cyprinidae | Rasbora bankanensis | native | ||
| Cypriniformes | Cyprinidae | Rasbora borapetensis | native | Blackline rasbora | |
| Cypriniformes | Cyprinidae | Rasbora borneensis | native | ||
| Cypriniformes | Cyprinidae | Rasbora brittani | native | ||
| Cypriniformes | Cyprinidae | Rasbora caudimaculata | native | Greater scissortail | |
| Cypriniformes | Cyprinidae | Rasbora cephalotaenia | native | ||
| Cypriniformes | Cyprinidae | Rasbora chrysotaenia | native | Goldstripe rasbora | |
| Cypriniformes | Cyprinidae | Rasbora daniconius | native | Slender rasbora | |
| Cypriniformes | Cyprinidae | Rasbora dorsiocellata | native | Eyespot rasbora | |
| Cypriniformes | Cyprinidae | Rasbora dusonensis | native | Rosefin rasbora | |
| Cypriniformes | Cyprinidae | Rasbora einthovenii | native | Brilliant rasbora | |
| Cypriniformes | Cyprinidae | Rasbora elegans | native | Twospot rasbora | |
| Cypriniformes | Cyprinidae | Rasbora ennealepis | native | ||
| Cypriniformes | Cyprinidae | Rasbora gracilis | native | ||
| Cypriniformes | Cyprinidae | Rasbora hubbsi | native | ||
| Cypriniformes | Cyprinidae | Rasbora kalochroma | native | Clown rasbora | |
| Cypriniformes | Cyprinidae | Rasbora kottelati | native | ||
| Cypriniformes | Cyprinidae | Rasbora lateristriata | native | Yellow rasbora | |
| Cypriniformes | Cyprinidae | Rasbora meinkeni | native | ||
| Cypriniformes | Cyprinidae | Rasbora notura | native | ||
| Cypriniformes | Cyprinidae | Rasbora pauciperforata | native | Redstripe rasbora | |
| Cypriniformes | Cyprinidae | Rasbora paucisqualis | native | Largescaled rasbora | |
| Cypriniformes | Cyprinidae | Rasbora rasbora | questionable | Gangetic scissortail rasbora | |
| Cypriniformes | Cyprinidae | Rasbora rutteni | native | ||
| Cypriniformes | Cyprinidae | Rasbora sarawakensis | native | ||
| Cypriniformes | Cyprinidae | Rasbora semilineata | native | ||
| Cypriniformes | Cyprinidae | Rasbora sumatrana | native | Seluang | |
| Cypriniformes | Cyprinidae | Rasbora tornieri | native | Yellowtail rasbora | |
| Cypriniformes | Cyprinidae | Rasbora trifasciata | native | ||
| Cypriniformes | Cyprinidae | Rasbora trilineata | native | Three-lined rasbora | Bada |
| Cypriniformes | Cyprinidae | Rasbora tubbi | native | ||
| Cypriniformes | Cyprinidae | Rasbora tuberculata | native | ||
| Cypriniformes | Cyprinidae | Rasbora volzii | native | ||
| Cypriniformes | Cyprinidae | Rasborichthys helfrichii | native | ||
| Perciformes | Gobiidae | Redigobius balteatus | native | Rhinohorn goby | |
| Perciformes | Gobiidae | Redigobius bikolanus | native | Speckled goby | |
| Cypriniformes | Cyprinidae | Rohteichthys microlepis | native | ||
| Cypriniformes | Cyprinidae | Schismatorhynchos holorhynchos | native | ||
| Cypriniformes | Balitoridae | Schistura balteata | native | ||
| Cypriniformes | Balitoridae | Schistura desmotes | native | ||
| Osteoglossiformes | Osteoglossidae | Scleropages formosus | native | Asian bonytongue | Baju rantai |
| Perciformes | Leiognathidae | Secutor ruconius | native | Deep pugnose ponyfish | Kekek |
| Clupeiformes | Engraulidae | Setipinna melanochir | native | Dusky-hairfin anchovy | Bersia |
| Cypriniformes | Cyprinidae | Sikukia stejnegeri | native | ||
| Perciformes | Sillaginidae | Sillago sihama | native | Silver sillago | Kedondong-kedondong |
| Siluriformes | Siluridae | Silurichthys hasseltii | native | ||
| Siluriformes | Siluridae | Silurichthys indragiriensis | native | ||
| Siluriformes | Siluridae | Silurichthys marmoratus | native | ||
| Siluriformes | Siluridae | Silurichthys phaiosoma | native | ||
| Siluriformes | Siluridae | Silurichthys schneideri | native | ||
| Perciformes | Osphronemidae | Sphaerichthys osphromenoides | native | Chocolate gourami | |
| Perciformes | Gobiidae | Stenogobius ingeri | native | ||
| Perciformes | Gobiidae | Stigmatogobius pleurostigma | native | ||
| Perciformes | Gobiidae | Stigmatogobius sadanundio | native | ||
| Perciformes | Gobiidae | Stigmatogobius sella | native | ||
| Perciformes | Gobiidae | Stiphodon atropurpureus | native | ||
| Perciformes | Gobiidae | Stiphodon aureorostrum | native | ||
| Cypriniformes | Cyprinidae | Sundadanio axelrodi | native | ||
| Clupeiformes | Sundasalangidae | Sundasalanx microps | native | ||
| Cypriniformes | Balitoridae | Sundoreonectes sabanus | native | ||
| Cypriniformes | Balitoridae | Sundoreonectes tiomanensis | native | ||
| Cypriniformes | Cobitidae | Syncrossus hymenophysa | native | Tiger loach | |
| Cypriniformes | Cobitidae | Syncrossus reversa | native | ||
| Perciformes | Gobiidae | Taenioides gracilis | native | Slender eel goby | |
| Clupeiformes | Clupeidae | Tenualosa macrura | native | Longtail shad | Ikan bengkalis |
| Clupeiformes | Clupeidae | Tenualosa toli | native | Toli shad | Terubuk mulut besar |
| Perciformes | Terapontidae | Terapon jarbua | native | Jarbua terapon | San gaa |
| Tetraodontiformes | Tetraodontidae | Tetraodon biocellatus | native | Eyespot pufferfish | |
| Tetraodontiformes | Tetraodontidae | Tetraodon leiurus | native | ||
| Tetraodontiformes | Tetraodontidae | Tetraodon nigroviridis | native | Spotted green pufferfish | |
| Tetraodontiformes | Tetraodontidae | Tetraodon palembangensis | native | ||
| Cypriniformes | Cyprinidae | Thynnichthys thynnoides | native | ||
| Perciformes | Cichlidae | Tilapia zillii | not established | Redbelly tilapia | |
| Cypriniformes | Cyprinidae | Tor douronensis | native | River carp | Belian |
| Cypriniformes | Cyprinidae | Tor tambra | native | ||
| Cypriniformes | Cyprinidae | Tor tambroides | native | Thai mahseer | |
| Perciformes | Toxotidae | Toxotes chatareus | native | Largescale archerfish | |
| Perciformes | Toxotidae | Toxotes jaculatrix | native | Banded archerfish | Sumpit-sumpit |
| Perciformes | Toxotidae | Toxotes microlepis | native | Smallscale archerfish | |
| Perciformes | Osphronemidae | Trichogaster leerii | native | Pearl gourami | |
| Perciformes | Osphronemidae | Trichogaster pectoralis | introduced | Snakeskin gourami | Sepat siam |
| Perciformes | Osphronemidae | Trichogaster trichopterus | native | Three spot gourami | Sepat padi |
| Perciformes | Osphronemidae | Trichopsis vittata | native | Croaking gourami | Karim |
| Cypriniformes | Cyprinidae | Trigonostigma heteromorpha | native | Harlequin rasbora | |
| Cypriniformes | Balitoridae | Tuberoschistura baenzigeri | native | ||
| Cypriniformes | Balitoridae | Vaillantella euepiptera | native | ||
| Cypriniformes | Balitoridae | Vaillantella maassi | native | ||
| Siluriformes | Siluridae | Wallago attu | native | Wallago | |
| Siluriformes | Siluridae | Wallago leerii | native | ||
| Siluriformes | Siluridae | Wallago maculatus | endemic | ||
| Beloniformes | Belonidae | Xenentodon cancila | native | Freshwater garfish | |
| Beloniformes | Hemiramphidae | Zenarchopterus beauforti | native | ||
| Beloniformes | Hemiramphidae | Zenarchopterus dispar | native | Feathered river-garfish | |
| Beloniformes | Hemiramphidae | Zenarchopterus ectuntio | native | ||
| Beloniformes | Hemiramphidae | Zenarchopterus gilli | native | Viviparous halfbeak |
Page created by: Eli, 15.08.07, last modified by: Lei, 20.11.08 |